GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:38:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

SB_BBc43-E20.F SB_BBc Sorghum bicolor genomic 5', genomic survey sequence.
EI997950.1:725-744
GCGCTGCACGGCTAGTGGGATTCGAACCTG725AGACCTCACCCTCAGGTGTAACCTTCTCTACCACTCCACCTATCACTCAA
SB_BBc202-P12.F SB_BBc Sorghum bicolor genomic 5', genomic survey sequence.
ER730294.1:725-744
GCGCTGCACGGCTAGTGGGATTCGAACCTG725AGACCTCACCCTCAGGTGTAACCTTCTCTACCACTCCACCTATCACTCAA
Gossypioides kirkii chromosome KI_01.
CP032244.1:8708293-8708312
CTGCACCGCTTGAACTACCTATGTTTTTTG8708293AGACCTCACCCTCAGGTGTACCACTTGTTGTGCCACTCTCATTAGTGCCA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:19225302-19225321
CTGCACCGCTTGAACTACCTACGTTTTTTG19225302AGACCTCACCCTCAGGTGTACCACTTGTTGTGCCACTCTCATTAGTGCCA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:23306288-23306307
CTGCACCGCTTGAACTACCTATGTTTTTTG23306288AGACCTCACCCTCAGGTGTACCACTTGTTGTGCCACTCTCATTAGTGCCA
Sequence 3331 from patent US 7557201.
GP472334.1:216-235
TGGCACTAATGAGAGTGGCACAACAAGTGG216TACACCTGAGGGTGAGGTCTCAAAAAAACGTAGGTAGTTCAAGCGGTGCA
EST1056121 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT545481.1:517-536
TGGCACTAATGAGAGTGGCACAACAAGTGG517TACACCTGAGGGTGAGGTCTCAAAAAACGTAGGTAGTTCAAGCGGTGCAG
UFL_563_20 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES797490.1:771-790
TGGCACTAATGAGAGTGGCACAACAAGTGG771TACACCTGAGGGTGAGGTCTCAAAAACGTAGGTAGTTCAAGCGGTGCAGC
H02-118G10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK798539.1:180-199
TGGCACTAATGAGAGTGGCACAACAAGTGG180TACACCTGAGGGTGAGGTCTCAAAAAACGTAGGTAGTTCAAGCGGTGCAG
G10-118G10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK798607.1:180-199
GGGCGCTAATGAGAGTGGCACAACAAGTGG180TACACCTGAGGGTGAGGTCTCAAAAAACGTAGGTAGTTCAAGCGGTGCAG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:106448965-106448984
TGGCACTAATGAGAGTGGCACAACAAGTGG106448965TACACCTGAGGGTGAGGTCTCAAAAAACGTAGGTAGTTCAAGCGGTGCAG
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:165708655-165708674
TGGCACTAATGAGAGTGGCACGACAAGTGG165708655TACACCTGAGGGTGAGGTCTCAAAAAACATAGGTAGTTCAAGCGGTGCAG
Sorghum bicolor cultivar Hongyingzi chromosome 5.
CP137829.1:5276239-5276258
TTGAGTGATAGGTGGAGTGGTAGAGAAGGT5276239TACACCTGAGGGTGAGGTCTCAGGTTCGAATCCCACTATCCGTGCAGCGC
Sorghum bicolor cultivar Hongyingzi chromosome 5.
CP137829.1:69067762-69067781
GTGAGTGATAGGTGGAGTGGTAGAGGAGGG69067762TACACCTGAGGGTGAGGTCTCAGGTTTGAAAAGACGGAGACGGGCGGGCG
Sorghum bicolor cultivar Huandiaonuo chromosome 5.
CP137839.1:5503634-5503653
TTGAGTGATAGGTGGAGTGGTAGAGAAGGT5503634TACACCTGAGGGTGAGGTCTCAGGTTCGAATCCCACTATCCGTGCAGCGC
Sorghum bicolor cultivar Huandiaonuo chromosome 5.
CP137839.1:69396058-69396077
GTGAGTGATAGGTGGAGTGGTAGAGGAGGG69396058TACACCTGAGGGTGAGGTCTCAGGTTTGAAAAGACGGAGACGGGCGGGCG
Sorghum bicolor cultivar Huandiaonuo chromosome 8.
CP137842.1:10673672-10673691
GTGAGTGATAGGTGGAGTGGTAGAGGAGGG10673672TACACCTGAGGGTGAGGTCTCAGGTTCGAATCCCACCGACCGCGTAGCAC
Gossypium hirsutum clone NBRI_TRANS-1024 microsatellite sequence.
JX963797.1:153-172
TGGCACTAATGAGAGTGGCACAACAAGTGG153TACACCTGAGGGTGAGGTCTCAAAAAACGTGGTAGTTCAAGCGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGACCTCACCCTCAGGTGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACCTCACCCTCAGGTGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.216 | 0.208 | search_plus_done; http://172.18.8.135:50400/match?q=AGACCTCACCCTCAGGTGTA&k=0&no_gap=0&offset=0&limit=50
0.719 | 0.503 | search_minus_done; http://172.18.8.135:50400/match?q=TACACCTGAGGGTGAGGTCT&k=0&no_gap=0&offset=0&limit=45
0.728 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).