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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 03:16:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mouse DNA sequence from clone RP23-104G20 on chromosome 4.
AL627211.13:105577-105596
AGTCTCCAGGGTGACCACTTCCAGGCTGGA105577AGAGAGAAGAGGAGATTGAGTCTCCCAGGCTCTGGAAACAGTGGACATGA
Bos taurus genome assembly, chromosome: 18.
LR962873.1:13526946-13526965
TCAGAGAAAGGTGAGATAATTGGAACTAAT13526946AGAGAGAAGAGGAGATTGAGGCTCAAAGAGGGGCAGCCAGTTGGTTAGAT
Gouania willdenowi genome assembly, chromosome: 6.
LR132000.1:15308058-15308077
CTCTCTGAGAAAACATGGCACGGTACGTGT15308058AGAGAGAAGAGGAGATTGAGACATTTCTCAGCATTATACTTTAAAATTAT
Salmo trutta genome assembly, chromosome: 18.
LR584435.1:8082815-8082834
TGTTTTGAAAAGAAAGCCTTGACTGTTGTG8082815AGAGAGAAGAGGAGATTGAGTGTATGCTTATGGTGGAGTTTTTTCAACAT
Microcaecilia unicolor genome assembly, chromosome: 5.
LR594636.1:28827790-28827809
AAAGTGTGGGGCAGGCGCATGGGATCTCTT28827790AGAGAGAAGAGGAGATTGAGATACTGTCAGTGGTGTGCTGGAGCGGGCTC
Geotrypetes seraphini genome assembly, chromosome: 1.
LR699146.1:14984572-14984591
ATCATGTCCCCTCTCAATCTCCTCTGTTCG14984572AGAGAGAAGAGGAGATTGAGAGGGGACATGATCGAAACGTTCAAGGTTGC
Pleuronectes platessa genome assembly, chromosome: 19.
OX374666.1:17064298-17064317
ATGGGGACAAAGAGGTAGAGGAAAATGAGA17064298AGAGAGAAGAGGAGATTGAGAGGAGAGGAAGAAGATGAGAGGAGATGGAG
Sprattus sprattus genome assembly, chromosome: 7.
OY735291.1:9104740-9104759
GAGAGGGGGTGGAGAGGGGAGGGGAAGAGA9104740AGAGAGAAGAGGAGATTGAGAGAAGGGAGAAGAGAGGAGAGGGGAAGAGA
Sardina pilchardus genome assembly, chromosome: 22.
OY974107.1:22574251-22574270
AGGGAAGGAAAGAAAGAGATATAGAAAGAA22574251AGAGAGAAGAGGAGATTGAGAGGAAAGAGAGAGAGTGAGATACAGGGAAA
human full-length cDNA 5-PRIME end of clone CS0DI005YM21 of PLACENTA COT 25-NORMALIZED of Homo sapiens (human).
BX377298.2:509-528
CAGTTCTGTCACCGTGTCTACCATTGATGA509AGAGAGAAGAGGAGATTGAGGCTAGGGAAGTTGCTGACTCATATGCACAG
EST897645 BEA Rhipicephalus microplus cDNA clone BEAET57, mRNA sequence.
CV443732.1:484-503
AGCATAAGGCCGAGACGGAGGAGCGTCGTC484AGAGAGAAGAGGAGATTGAGAAAAACATGGCGAAGTTGGCTGACGCGAGG
CLJ12-G04.y1d-s SHGC-CLJ Gasterosteus aculeatus cDNA clone CLJ12-G04 5', mRNA sequence.
DN697617.1:176-195
CTCTGTCAATAGAAATCCAGAAGCTGAGGA176AGAGAGAAGAGGAGATTGAGAAGGAGTGGCGATCAAAGGTGGAAGAGGCA
WS02735.C21_D04 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02735_D04 5, mRNA sequence.
DR531352.1:42-61
AAAGAAGTGAACTGGAGAACAGCATAGAGA42AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
GQ0067.TB_J12 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0067_J12 3', mRNA sequence.
DV976304.2:519-538
AAAGAAGTGAACTGGAGAACAGCATAGAGA519AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
GQ02012.B7_I20 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02012_I20 3', mRNA sequence.
DV988509.2:305-324
AAAGAAGTGAACTGGAGAACAGCATAGAGA305AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
GQ02806.B7_F10 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02806_F10 5', mRNA sequence.
EX313656.1:327-346
AAAGAAGTGAACTGGAGAACAGCATAGAGA327AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGTGCCTTCTGCC
GQ03103.B7.1_N14 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03103_N14 5', mRNA sequence.
EX345529.1:108-127
AAAGAAGTGAACTGGAGAACAGCATAGAGA108AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
GQ03103.B7_N14 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03103_N14 5', mRNA sequence.
EX345890.1:108-127
AAAGAAGTGAACTGGAGAACAGCATAGAGA108AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
GQ03121.B7_I01 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03121_I01 5', mRNA sequence.
EX356990.1:121-140
AAAGAAGTGAACTGGAGAACAGCATAGAGA121AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
P04E22.M13FL.k16_091.ab1 Elephant shark full-length cDNA library from kidney Callorhinchus milii cDNA clone P04E22.M13FL.k16, mRNA sequence.
JK940900.1:182-201
AGCTTGAGGGACTGAAGCATGAGATCAAGC182AGAGAGAAGAGGAGATTGAGATCCTGAACGGGCAGCTGGAGGCAGTGACA
TSA: Callorhinchus milii sp.comp5110_c0_seq1 mRNA sequence.
JW865865.1:1369-1388
AGCTTGAGGGACTGAAGCATGAGATCAAGC1369AGAGAGAAGAGGAGATTGAGATCCTGAACGGGCAGCTGGAGGCAGTGACA
TSA: Callorhinchus milii ov.comp7102_c0_seq1 mRNA sequence.
JW868939.1:571-590
AGCTTGAGGGACTGAAGCATGAGATCAAGC571AGAGAGAAGAGGAGATTGAGATCCTGAACGGGCAGCTGGAGGCAGTGACA
SP_0098_B1_B08_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=98 Col=15 Row=D, genomic survey sequence.
AZ167486.1:403-422
AGAGGGAGAGATTCCGAGAGAGATACAGAG403AGAGAGAAGAGGAGATTGAGGGAGAGGAGAAAGAAGTGGAAGATAGATAG
Ynhw24843 HW-YUBAC Bos taurus genomic clone HW-YUBAC1-011-04-C09-T7.ab1 5', genomic survey sequence.
ED841564.1:451-470
TCAGAGAAAGGTGAGATAATTGGAACTAAT451AGAGAGAAGAGGAGATTGAGGCTCAAAGAGGGGCAGCCAGTTGGTTAGAT
Strongylocentrotus purpuratus clone R3-1111B19, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC181516.1:42851-42870
ATTGCAAGAGAGGGGGAGAGAGAGAAGAGG42851AGAGAGAAGAGGAGATTGAGGGCCATAACCGGATAGATGTATAAAGAAAG
Picea glauca clone GQ03121_I01 mRNA sequence.
BT108415.1:121-140
AAAGAAGTGAACTGGAGAACAGCATAGAGA121AGAGAGAAGAGGAGATTGAGCAGTTGTTGCATGAAAAGGAGGTTGAGTTT
Glycine max cultivar Williams 82 chromosome 14.
CP126439.1:11350377-11350396
TTGTTCTGATAAAAGAGTTGAGAGAACTTG11350377AGAGAGAAGAGGAGATTGAGATTGAGAAAACCAATATTATTCAACCCAAC
Spirodela intermedia genome assembly, chromosome: 6.
LR743593.1:5841488-5841507
ATCTCTCTGTGCTTCCTCAAATCAACAAGA5841488AGAGAGAAGAGGAGATTGAGCGTGGTGAGGGAGTGTCTCCCCGTGGACGG
Spirodela intermedia genome assembly, chromosome: 6.
LR746269.1:5614230-5614249
ATCTCTCTGTGCTTCCTCAAATCAACAAGA5614230AGAGAGAAGAGGAGATTGAGCGTGGTGAGGGAGTGTCTCCCCGTGGACGG
Triticum aestivum genome assembly, chromosome: 5A.
LR862520.1:535733858-535733877
CCAGTATCCAGGAAGAATATGAACGCTAGG535733858AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 2B.
LR862533.1:618641539-618641558
TGCTATTCTATGAAGAAGACGAACGCTACG618641539AGAGAGAAGAGGAGATTGAGGAAGAAGATAAATTATGACATGTAGGCCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR862541.1:530489678-530489697
CCAGTATCCAGGAAGAATATGAACGCTAGG530489678AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR862562.1:532644203-532644222
CCAGTATCCAGGAAGAATATGAACGCTAGG532644203AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR865470.1:526752451-526752470
CCAGTATCCAGGAAGAATATGAACGCTAGG526752451AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR865491.1:536206993-536207012
CCAGTATCCAGGAAGAATATGAACGCTAGG536206993AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR865512.1:533378304-533378323
CCAGTATCCAGGAAGAATATGAACGCTAGG533378304AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR865751.1:536888990-536889009
CCAGTATCCAGGAAGAATATGAACGCTAGG536888990AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR865772.1:526547494-526547513
CCAGTATCCAGGAAGAATATGAACGCTAGG526547494AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR877321.1:535467369-535467388
CCAGTATCCAGGAAGAATATGAACGCTAGG535467369AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LR878447.1:536665617-536665636
CCAGTATCCAGGAAGAATATGAACGCTAGG536665617AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
LS992092.1:534265472-534265491
CCAGTATCCAGGAAGAATATGAACGCTAGG534265472AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum turgidum subsp. durum genome assembly, chromosome: 5A.
LT934119.1:497379458-497379477
CCAGTATCCAGGAAGAATATGAACGCTAGG497379458AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
OU015733.1:537050197-537050216
CCAGTATCCAGGAAGAATATGAACGCTAGG537050197AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
OU343173.1:536978281-536978300
CCAGTATCCAGGAAGAATATGAACGCTAGG536978281AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
OU963884.1:547686099-547686118
CCAGTATCCAGGAAGAATATGAACGCTAGG547686099AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
OV100749.1:536988695-536988714
CCAGTATCCAGGAAGAATATGAACGCTAGG536988695AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
OW530322.1:536988695-536988714
CCAGTATCCAGGAAGAATATGAACGCTAGG536988695AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum aestivum genome assembly, chromosome: 5A.
OX637237.1:433032666-433032685
CCAGTATCCAGGAAGAATATGAACGCTAGG433032666AGAGAGAAGAGGAGATTGAGGAAAAAGATATATTATAACATGTAGGTCCG
Triticum monococcum genome assembly, chromosome: 3A.
OY737860.1:701555311-701555330
CCAGTATCCAGGAAGAATATGAACGCTAGG701555311AGAGAGAAGAGGAGATTGAGGAAGAAGATATATTATAACATGTAGGTCCG
Geranium rotundifolium genome assembly, chromosome: 13.
OY987323.1:18481203-18481222
AGAAAATTAAAAGTTGTTGATGTAATGAAT18481203AGAGAGAAGAGGAGATTGAGAGCTTGGAGGAGAAATCAACACGATGACAT
Triticum timopheevii genome assembly, chromosome: 2G.
OY997264.1:619752539-619752558
TGCTATTCTATGAAGAAGACGAACGCTACG619752539AGAGAGAAGAGGAGATTGAGGAAGAAGATAAATTATGACATGTAGGCCCG
Triticum timopheevii genome assembly, chromosome: 4At.
OY997267.1:608047525-608047544
CCAGTATCCAGGAAGAATATGAACGCTAGG608047525AGAGAGAAGAGGAGATTGAGGAAGAAGATATATTATAACATGTAGGTCTG
Triticum timopheevii genome assembly, chromosome: 5At.
OY997269.1:516114117-516114136
CCAGTATTCAGAAAGAATATGAACGCTAGG516114117AGAGAGAAGAGGAGATTGAGGAAGAACATATATTATAACATGTAGGTCCG
Macrobrachium nipponense isolate FS-2020 chromosome 17.
CP062018.1:10044902-10044921
CCCTATTTATAATCCCTTTGGAGAGAGAGG10044902AGAGAGAAGAGGAGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
Macrobrachium nipponense isolate FS-2020 chromosome 45.
CP062043.1:21736254-21736273
CAGAAAGGTGAAGCTCACAATTTCAGAGAG21736254AGAGAGAAGAGGAGATTGAGAGGAAGAGAGAAGGAGGACGAGAGAGAGAG
Cordylochernes scorpioides isolate IN4F17 chromosome 01.
CP092863.1:148257141-148257160
ATAGAGATAATTATACCTGTCTTTAGAAAG148257141AGAGAGAAGAGGAGATTGAGATTGAATCAACTTTTATTACTTCGTTCATA
Cordylochernes scorpioides isolate IN4F17 chromosome 01.
CP092863.1:148301601-148301620
ATAGAGATAATTATACCTGTCTTAAGAAAT148301601AGAGAGAAGAGGAGATTGAGATTGAATCAACTTTTATTACTTCGTTCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGAGAAGAGGAGATTGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGAGAAGAGGAGATTGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.965 | 0.956 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGAGAAGAGGAGATTGAG&k=0&no_gap=0&offset=0&limit=50
1.019 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAATCTCCTCTTCTCTCT&k=0&no_gap=0&offset=0&limit=0
1.019 | 0.000 | cgi_end;

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