GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:03:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 4, clone: LjT14P17, TM0577.
AP007443.2:92261-92280
TATTTTCTTCTACAATTATGAACATTCATT92261AGAGAGATAGGGTTGCTCACATCACTCTCTTGTCTTTTCTGCATTCTCTC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256.
AP009066.1:81167-81186
TATTTTCTTCTACAATTATGAACATTCATT81167AGAGAGATAGGGTTGCTCACATCACTCTCTTGTCTTTTCTGCATTCTCTC
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:2386131-2386150
TATTTTCTTCTACAATTATGAACATTCATT2386131AGAGAGATAGGGTTGCTCACATCACTCTCTTGTCTTTTCTGCATTCTCTC
Peromyscus eremicus genome assembly, chromosome: 15.
OX460409.1:60556689-60556708
CTTGACTCTTGGGTGTTACTACTGGACAAA60556689GTGAGCAACCCTATCTCTCTCCACTTTCCACCCGTACTAGGGGTGGGTAG
Peromyscus eremicus genome assembly, chromosome: 15.
OX460481.1:60658551-60658570
CTTGACTCTTGGGTGTTACTACTGGACAAA60658551GTGAGCAACCCTATCTCTCTCCACTTTCCACCCGTACTAGGGGTGGGTAG
Coregonus sp. 'balchen' genome assembly, chromosome: 24.
LR778276.1:16876190-16876209
TCACACTCCAGCTCATCAATGAGTGTTAAT16876190GTGAGCAACCCTATCTCTCTTATAAATGAGTCCCGACTCCCCCTCATCAC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX460085.1:38152378-38152397
GAGAAGAAGCCCTGCAGCCCCCCCCCCACG38152378GTGAGCAACCCTATCTCTCTCTCTCCTCCGTCTGATCTGCTCTAGACGGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX590744.1:39119005-39119024
GGAGAAGAAGCCCTGCAGCCCCCCCCCACG39119005GTGAGCAACCCTATCTCTCTCTCTCCTCCGTCTGATCTGCTCTAGACGGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX638745.1:40323995-40324014
GAAGAAGCCCTGCAGCCCCCCCCCCCCACG40323995GTGAGCAACCCTATCTCTCTCTCTCCTCCGTCTGATCTGCTCTAGACGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGAGATAGGGTTGCTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGAGATAGGGTTGCTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGAGATAGGGTTGCTCAC&k=0&no_gap=0&offset=0&limit=50
0.138 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAGCAACCCTATCTCTCT&k=0&no_gap=0&offset=0&limit=47
0.142 | 0.004 | cgi_end;

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