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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:11:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Macaca fascicularis complete genome, chromosome chr2.
LT160001.1:103925578-103925597
GGGNGAGTTTGTAGAGGTCACTTGGATTTA103925578AGAGATGGAGACCTGAGCCAGGGCTTAGGAATGGGAGTCTTGGCTTTGTT
Sciurus vulgaris genome assembly, chromosome: 18.
LR738629.1:1377218-1377237
GGCCTGGATGAGGGAGGTGAGTGGAAGAGT1377218AGAGATGGAGACCTGAGCCAGGGGTTCTACACCTCCATCAGGTGGGGGAA
Acomys russatus genome assembly, chromosome: 10.
LR877221.1:39967925-39967944
CTACTTCATCCCGGACATTAATTAGAGATG39967925AGAGATGGAGACCTGAGCCATACAGACAGATAACAGCCTTTCACAGTTTC
Chionomys nivalis genome assembly, chromosome: 20.
OX465468.1:49205121-49205140
CCTCAAACTCTCAAAGATGAGTCAAGGAGG49205121AGAGATGGAGACCTGAGCCATGAGTCAGTTTCTTTATTAATTTGACATCT
Myotis daubentonii genome assembly, chromosome: 1.
OY725359.1:203614673-203614692
AACAGTGAAAACAAAGGCAAACTCTAATTG203614673AGAGATGGAGACCTGAGCCAAAGGGCTATTTTGCTCATTCCTAGTTGATG
Martes martes genome assembly, chromosome: 1.
OY734063.1:58498135-58498154
AGAGCCAGATGCAGCCTGATTCCACCACCT58498135AGAGATGGAGACCTGAGCCAAAATCAACAGTTGGACACTCAACTAAGCTA
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 8.
CP133532.1:4499379-4499398
ACCCATCGCTCCGACGATCACTCGCCTTCA4499379AGAGATGGAGACCTGAGCCACACCTCGCGATCCAATCTCAGAAGAACTCA
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 9.
CP133533.1:2734988-2735007
ACCCATCGCTCCGACGATCACTCGCCTTCA2734988AGAGATGGAGACCTGAGCCACACCTCGCGATCCAATCTCAGAAGAACTCA
Gadus morhua genome assembly, chromosome: 9.
LR633951.1:3606601-3606620
ACCCATCGCTCCGACGATCACTCGCCTTCA3606601AGAGATGGAGACCTGAGCCACACGTCGCGATCCAATCTCAGATGAACTCA
TSA: Capsicum annuum MGMT_Contig7196, mRNA sequence.
JW057440.1:1923-1942
ATCGTCGTCGTCGTTGAGGAAATTAAGGGG1923AGAGATGGAGACCTGAGCCATTGCTGAAGAAAATGGGCAAACGTTTTTCT
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:276184425-276184444
ATCGTCGTCGTCGTTGAGGAAATTAAGGGG276184425AGAGATGGAGACCTGAGCCATTGCTGAAGAAAATGGGCAAGCGTTTTTCT
Sciurus carolinensis genome assembly, chromosome: 18.
LR738608.1:40271793-40271812
TTCCCCCACCTGATGGAGGTGTAGAACCCC40271793TGGCTCAGGTCTCCATCTCTACTCTTCCACTAACCTCCCTCATCCAGGCC
KS09087F11 KS09 Capsicum annuum cDNA, mRNA sequence.
CA517699.1:178-197
AGAAAAACGCTTGCCCATTTTCTTCAGCAA178TGGCTCAGGTCTCCATCTCTCCCCTTAATTTCCTC
KS12046B02 KS12 Capsicum annuum cDNA, mRNA sequence.
CA524960.1:37-56
AGAAAAACGTTTGCCCATTTTCTTCAGCAA37TGGCTCAGGTCTCCATCTCTCCCCTTAATTTCCTCAACGACGACGACGAT
BJ02015F08 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO907339.1:10-29
CTTCAGCAA10TGGCTCAGGTCTCCATCTCTCCCCTTAATTTCCTCAACGACGACGACGAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:15606260-15606279
AGAAAAACGCTTGCCCATTTTCTTCAGCAA15606260TGGCTCAGGTCTCCATCTCTCCCCTTAATTTCCTCAACGACGACGACGAT
Rhodotorula mucilaginosa strain GDMCC2.30 chromosome 15.
CP137878.1:289007-289026
CGTTTCGAGCTGCTTTGGTGAAGACTTCTG289007TGGCTCAGGTCTCCATCTCTCTCCTTTACAAAGGGACTCCACCGCCCGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAGATGGAGACCTGAGCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGATGGAGACCTGAGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.169 | 0.161 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGATGGAGACCTGAGCCA&k=0&no_gap=0&offset=0&limit=50
0.302 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCTCAGGTCTCCATCTCT&k=0&no_gap=0&offset=0&limit=39
0.307 | 0.004 | cgi_end;

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