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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 02:22:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus carolinensis genome assembly, chromosome: 1.
LR738590.1:114762110-114762129
TCCTGGCTGAAAGTCAGATTGAAATAAAAT114762110AGAGATGGATGAGATTGGGAAATATTGAAATCAAATACAGCATCAGGGGG
25RDBNM_UP_013_H02_15JAN2004_002 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
CN733594.1:578-597
GTCAGGAATGAGAAAGTTGAGCAATGATTA578AGAGATGGATGAGATTGGGATTGGGGTTTCAGGGTTGAATTATGAGTCTG
Brassica oleracea var. viridis mRNA, clone: KALE-037E05, 5' end sequence.
DK469793.1:607-626
GTCAGGAATGAGAAAGTTGAGCGATGATGA607AGAGATGGATGAGATTGGGATTGAGGTTTCAGAGTCTGATGAGTTGAACA
BNAOV1GH_T3_049_D04_13JULY2007_026 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR443935.1:75-94
GTCAGGAATGAGAAAGTTGAGCGATGATGA75AGAGATGGATGAGATTGGGATTGAGGTTTCAGAGTCTGATGAGTTGAACA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:12564579-12564598
GTCAGAAATGAGAAAGTTGAGCAATGATGA12564579AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25652817-25652836
GTCAGGAATGAGAAAGTTGAGCAATGATTA25652817AGAGATGGATGAGATTGGGATTGGGGTTTCAGGGTTGAATTATGAGTCTG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:14231994-14232013
GTCAGGAATGAGAAAGTTGAGCGATGATGA14231994AGAGATGGATGAGATTGGGATTGAGGTTTCAAGGTTGAATTATGAGTCTG
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:1420577-1420596
GTCAGAAATGAGAAAGTTGAGCAATGATGA1420577AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica napus genome assembly, chromosome: A04.
HG994358.1:1320076-1320095
GTCAGAAATGAGAAAGTTGAGCAATGATGA1320076AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome, scaffold: A09.
LR031568.1:43839481-43839500
GTCAGAAATGAGAAAGTTGAGCAATGATGA43839481AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome, scaffold: A09.
LR031568.1:54437439-54437458
GTCAGGAATGAGAAAGTTGAGCAATGATTA54437439AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome, scaffold: A06.
LR031569.1:11442498-11442517
GTCAGAAATGAGAAAGTTGAGCAATGATGA11442498AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome, scaffold: A04.
LR031576.1:1307073-1307092
GTCAGAAATGAGAAAGTTGAGCAATGATGA1307073AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:1329324-1329343
GTCAGAAATGAGAAAGTTGAGCAATGATGA1329324AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:12290410-12290429
GTCAGAAATGAGAAAGTTGAGCAATGATGA12290410AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:54289019-54289038
GTCAGAAATGAGAAAGTTGAGCAATGATGA54289019AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:64960997-64961016
GTCAGGAATGAGAAAGTTGAGCAATGATTA64960997AGAGATGGATGAGATTGGGATTGAGGTTTCAGGGTTGAATTATGAGTCTG
Avena eriantha genome assembly, chromosome: 2C.
OU342741.1:197247655-197247674
TCATGTATGGAGAATTAAAATAGAGGAAAA197247655AGAGATGGATGAGATTGGGAGGATGGTGTAATGGTGGTAGATTGCCTCCC
Avena eriantha genome assembly, chromosome: 3C.
OU342742.1:445027303-445027322
CATGTATGGAGAATTAAAATAAGAGGAAAA445027303AGAGATGGATGAGATTGGGAGGATGGTGTAATGGTGGTAGATGGCCTCCC
Avena eriantha genome assembly, chromosome: 3C.
OU342742.1:445036363-445036382
CATGTATGGAGAATTAAAATAAGAGGAAAA445036363AGAGATGGATGAGATTGGGAGGATGGTGTAATGGTGGTAGATGGCCTCCC
Avena eriantha genome assembly, chromosome: 4C.
OU342743.1:27288765-27288784
ATGCATGGAGATTTACAAATAAGAGGAAAA27288765AGAGATGGATGAGATTGGGAGGATGGTGTAATGGTGGTAGATGTTTTCCC
Tipula lateralis genome assembly, chromosome: 2.
OZ010737.1:156167547-156167566
TACTGCTGTGGTTGGGGGGAGTGGGGTTTC156167547AGAGATGGATGAGATTGGGACGGGCATGGCGGTTGAGCTAGTTGCGGTTG
Sciurus vulgaris genome assembly, chromosome: 1.
LR738611.1:95445499-95445518
CCCCCTGATGCTGCATTTGATTTCAATATT95445499TCCCAATCTCATCCATCTCTGTTTTATTTCAATCTGACTTTCAGCCAGGA
Microcaecilia unicolor genome assembly, chromosome: 2.
LR594633.1:335907803-335907822
CTCCTGCTCCTTCCCTCTGCTTCCCACCCC335907803TCCCAATCTCATCCATCTCTTGCTCCTTCCCTCTGCTCCCCACCCCTCCC
Pungitius pungitius genome assembly, chromosome: 14.
OX438554.1:13898900-13898919
CAAATGACATGAGAGCGGTTCCAATAGGGG13898900TCCCAATCTCATCCATCTCTCAGCAAGAAACCAAATCAGTCTATATCTTA
0206479 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140551.1:369-388
CAGACTCATAATTCAACCCTGAAACCTCAA369TCCCAATCTCATCCATCTCTTCATCATTGCTCAACTTTCTCATTTCTGAC
0206559 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140630.1:497-516
CAGACTCATAATTCAACCCTGAAACCTCAA497TCCCAATCTCATCCATCTCTTCATCATTGGTCAACTTTCTCATTTCTGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
AC189573.1:66311-66330
CAGACTCATAATTCAACCCTGAAACCTCAA66311TCCCAATCTCATCCATCTCTTCATCATTGCTCAACTTTCTCATTTCTGAC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:1089382-1089401
CAGACTCATAATTCAACCCTGAAACCCCAA1089382TCCCAATCTCATCCATCTCTTAATCATTGCTCAACTTTCTCATTCCTGAC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:36232084-36232103
CAGACTCATAATTCAACCTTGAAACCTCAA36232084TCCCAATCTCATCCATCTCTTCATCATCGCTCAACTTTCTCATTCCTGAC
Brassica rapa genome, scaffold: A10.
LR031577.1:1115014-1115033
CAGACTCATAATTCAACCCTGAAACCCCAA1115014TCCCAATCTCATCCATCTCTTAATCATTGCTCAACTTTCTCATTCCTGAC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:36036785-36036804
TGTTCAACTCATCAGACTCTGAAACCTCAA36036785TCCCAATCTCATCCATCTCTTCATCATCGCTCAACTTTCTCATTCCTGAC
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:1112512-1112531
CAGACTCATAATTCAACCCTGAAACCCCAA1112512TCCCAATCTCATCCATCTCTTAATCATTGCTCAACTTTCTCATTCCTGAC
Avena eriantha genome assembly, chromosome: 2C.
OU342741.1:308228008-308228027
GGGAGGCCATCTACCACCATTACACCATCC308228008TCCCAATCTCATCCATCTCTTTTTCCTCTTATTTTAATTCTCCATACATG
Avena eriantha genome assembly, chromosome: 2C.
OU342741.1:320333157-320333176
GGGAGGCCATCTACCACCATTACACCATCC320333157TCCCAATCTCATCCATCTCTTTTTCCTCTTATTTTAATTCTCCATACATG
Ailanthus altissima genome assembly, chromosome: 15.
OX327697.1:26558247-26558266
AGTCCACCTCCTAACCTACTAATAGATGTC26558247TCCCAATCTCATCCATCTCTTCCTCAGTGTTAGCATCCTCAAAGCCCCCA
Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:21837006-21837025
GTCGCCACCGCATTCACCGTTACTGTTTCA21837006TCCCAATCTCATCCATCTCTTCAGGTATGTTTTATTTCAATCTTGTTTTC
Caenorhabditis doughertyi genome assembly, chromosome: IV.
OY751556.1:14120797-14120816
TTTTCATGTTTTGTTGTTATTGTTGTACTA14120797TCCCAATCTCATCCATCTCTAATTGTAAGTAGTATACTTCTTCTCTTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAGATGGATGAGATTGGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGATGGATGAGATTGGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.505 | 0.497 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGATGGATGAGATTGGGA&k=0&no_gap=0&offset=0&limit=50
0.803 | 0.297 | search_minus_done; http://172.18.8.135:50400/match?q=TCCCAATCTCATCCATCTCT&k=0&no_gap=0&offset=0&limit=28
0.813 | 0.010 | cgi_end;

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