GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 23:10:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Lens culinaris contig04469.Lecu mRNA sequence.
JI850736.1:746-765
ATTGGAATCGGAGAGGAAGAAGAAGTGTCA746AGAGCAAGTCCCCAACCTTTGTCCATATAATATATAATGAGATCAGAGAT
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:8265556-8265575
GGTATTGGAGATGAAGATGAAGAAGTATCA8265556AGAGCAAGTCCCCAACCTTTGTCCATATATATATAGAATATAGAATGAAC
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:9369235-9369254
GGTATAGGTGAAGAAGATGAAGAAGTATCA9369235AGAGCAAGTCCCCAACCTTTGTCCATATATAGAATGAGCAAAGAAAAGGA
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:19366019-19366038
GGTATTGGAGAGGAAGATGAAGAAGTATCA19366019AGAGCAAGTCCCCAACCTTTGTCCATATATATAGAAAAGAAAGAGAATAT
Trifolium repens mRNA, clone: WCC06k10_061, unspecified EST.
FY456291.1:68-87
CTTTTCTTTGTTTATTCTCTATGTATGGAC68AAAGGTTGGGGACTTGCTCTTGATACTTCTTCATCTTCATCTCCAATACC
Trifolium repens mRNA, clone: WCC23i16_053, unspecified EST.
FY462202.1:85-104
CTTTTCTTTGTTTATTCTCTATATATGGAC85AAAGGTTGGGGACTTGCTCTTGATACTTCTTCATCTTCATCTCCAATACC
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:7694212-7694231
CTTTTCTTTGTTTATTCTCTATATATGGAC7694212AAAGGTTGGGGACTTGCTCTTGATACTTCTTCATCTTCATCTCCAATACC
Vicia faba genome assembly, chromosome: 1L.
OX451736.1:1584555327-1584555346
TTTTGAGTTTTCATTATATATTATATGGAC1584555327AAAGGTTGGGGACTTGCTCTTGACGCTTCTTCTTCCTCTCCAATTCCAAT
Lathyrus sativus genome assembly, chromosome: 1.
OZ012735.1:105491803-105491822
TTTTCTGTTTTCATTATATATTATATGGAC105491803AAAGGTTGGGGACTTGCTCTTGACACTTCTTCTTCTTTTTTACCTTCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGCAAGTCCCCAACCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGCAAGTCCCCAACCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGCAAGTCCCCAACCTTT&k=0&no_gap=0&offset=0&limit=50
0.292 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGGTTGGGGACTTGCTCT&k=0&no_gap=0&offset=0&limit=46
0.295 | 0.004 | cgi_end;

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