GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:40:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-29023 Leaf Coffea canephora cDNA clone cccl1b13 5', mRNA sequence.
DV687125.1:140-164
TACATTTTTGCAGTAACATCTATAGCTGCA140AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CGN-31272 Leaf Coffea canephora cDNA clone cccl18j22 5', mRNA sequence.
DV688550.1:171-195
TACATTTTTGCAGTAACATCTATAGCTGCA171AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CGN-34032 Leaf Coffea canephora cDNA clone cccl24e2 5', mRNA sequence.
DV690587.1:118-142
TACATTTTTGCAGTAACATCTATAGCTGCA118AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CA00-XX-LV8-088-H01-CB.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-088-H01-CB, mRNA sequence.
GT698672.1:148-172
TACATTTTTGCAGTAACATCTATAGCTGCA148AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CA00-XX-LV9-036-E11-BM.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-036-E11-BM, mRNA sequence.
GT711095.1:147-171
TACATTTTTGCAGTAACATCTATAGCTGCA147AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CA00-XX-EA1-024-E02-EC.F Coffea arabica EA1 Coffea arabica cDNA clone CA00-XX-EA1-024-E02-EC, mRNA sequence.
GT725700.1:178-202
TACATTTTTGCAGTAACATCTATAGCTGCA178AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CA00-XX-RT8-013-D05-JF.F Coffea arabica RT8 Coffea arabica cDNA clone CA00-XX-RT8-013-D05-JF, mRNA sequence.
GT727519.1:165-189
TACATTTTTGCAGTAACATCTATAGCTGCA165AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA
CCES77 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110717.1:171-195
TACATTTTTGCAGTAACATCTATAGCTGCA171AGAGCAATGAGAAACAAACGAAACTCTGCAATCTTGTAACTTCACTTGGATTGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGCAATGAGAAACAAACGAAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGCAATGAGAAACAAACGAAACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.726 | 0.717 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGCAATGAGAAACAAACGAAACT&k=0&no_gap=0&offset=0&limit=50
0.805 | 0.079 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTTCGTTTGTTTCTCATTGCTCT&k=0&no_gap=0&offset=0&limit=42
0.805 | 0.000 | cgi_end;

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