GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 10:58:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Peromyscus eremicus genome assembly, chromosome: 14.
OX460480.1:84177122-84177141
CACTTGTGTCGAATCTGGAAAAAAAAAAAA84177122AGAGGAAGAGGAAGAAGCGCAGCCTGGGGGTTAAGTAGGGAGGCCCTGCG
Parambassis ranga genome assembly, chromosome: 13.
LR131963.1:23739182-23739201
ACAACACAGAGGAGAGGAAGAGGAAGAGGA23739182AGAGGAAGAGGAAGAAGCGCGGCGTGTTGAAAGTGCGACAGTCTTTGCAT
Parambassis ranga genome assembly, chromosome: 13.
LR131963.1:23902533-23902552
CAGAGGAGAGGAAGAGGAAGAGGAAGAGGA23902533AGAGGAAGAGGAAGAAGCGCGGCGTGTTGAAAGTGCGACAGTCTTTGCAT
Geotrypetes seraphini genome assembly, chromosome: 4.
LR699149.1:92182561-92182580
TGATGTCAGAGAAAGGGCGGGACCACCGGA92182561AGAGGAAGAGGAAGAAGCGCAGCAGGGCTCAGAGAAGGGGCAGGACCGCC
Scyliorhinus canicula genome assembly, chromosome: 12.
LR744041.1:116828058-116828077
TGTCGAGGAGGGCAGCAAGGGACAACCTGC116828058AGAGGAAGAGGAAGAAGCGCCTTGGGCGATGGCTAGGGCCCGCATGTGTA
Taurulus bubalis genome assembly, chromosome: 5.
OU342715.1:7906396-7906415
AAAAACTATTATATTTTAAAAAGCAGCACT7906396AGAGGAAGAGGAAGAAGCGCTTTGCATTTTGAAACTGTTTCATAAGTTGA
Nesoenas mayeri genome assembly, chromosome: 29.
OY720086.1:125594-125613
GGAGGAAGAGGAGGAGGAAGAGGAGGAGGA125594AGAGGAAGAGGAAGAAGCGCCCCCACCGCAAACCCCCCCGCGCCGCTCGC
Echiichthys vipera genome assembly, chromosome: 7.
OY829652.1:124380-124399
TTACTTTGTTAAATACAAAGAACACGAGGA124380AGAGGAAGAGGAAGAAGCGCCGCTCTTACTCCTGCAGGTGCCGGCTGCAT
Sequence 33250 from patent US 7569389.
GP684368.1:546-565
AGAAGAAGAMGAAGAAGAAGAAGGAGAGGA546AGAGGAAGAGGAAGAAGCGCGTTCGATGGTGAACGAGTTGGCTCAGTTGG
Sequence 50956 from patent US 7569389.
GP689005.1:546-565
AGAAGAAGAAGAAGAAGAAGAAGGAGAGGA546AGAGGAAGAGGAAGAAGCGCGTTCGATGGTGAACGAGTTGGCTCAGTTGG
Sequence 110268 from patent US 9029636.
HL019332.1:467-486
AGAAGAAGAAGAAGAAGAAGAAGGAGAGGA467AGAGGAAGAGGAAGAAGCGCGTTCGATGGTGAACGAGTTGGCTCAGTTGG
Glycine max cDNA, clone: GMFL02-22-F14, 5'end.
DB963101.1:542-561
AGAAGAAGAAGAAGAAGAAGAAGGAGAGGA542AGAGGAAGAGGAAGAAGCGCGTTCGATGGTGAACGAGTTGGCTCAGTTGG
Glycine max cDNA, clone: GMFL02-22-F14, 3'end.
DB980796.1:75-94
AGAAGAAGAAGAAGAAGAAGAAGTTCAAGA75AGAGGAAGAGGAAGAAGCGCGTTCGATGGTGAACGAGTTGGCTCAGTTGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_32545.
FX718714.1:166-185
AGCCGGAGAGCTTCTGTGTCGGAACAAAGA166AGAGGAAGAGGAAGAAGCGCCGGAATGTCCGATGGTAGATGGTTCGCCTG
TSA: Strongylocentrotus purpuratus WHL22.756779.0 mRNA sequence.
JT113159.1:332-351
TGAGTTGGCTTTCAACGACCACAGGCCCAG332AGAGGAAGAGGAAGAAGCGCCGGGACACTTCGGCACCAAAAAGAGAAAAA
Strongylocentrotus purpuratus clone R3-3033D20, WORKING DRAFT SEQUENCE, 17 unordered pieces.
AC178507.1:107755-107774
TGAGTTGGCTTTCAACGACCACAGGCCCAG107755AGAGGAAGAGGAAGAAGCGCCGGGACACTTCGGCACCAAAAAGAGAAAAA
Strongylocentrotus purpuratus clone R3-3033D20, WORKING DRAFT SEQUENCE, 17 unordered pieces.
AC178507.1:167413-167432
TGAGTTGGCTTTCAACGACCACAGGCCCAG167413AGAGGAAGAGGAAGAAGCGCCGGGACACTTCGGCACCAAAAAGAGAAAAA
Strongylocentrotus purpuratus clone R3-3011H11, WORKING DRAFT SEQUENCE, 29 unordered pieces.
AC180470.1:105778-105797
TGAGTTGGCTTTCAACGACCACAGGCCCAG105778AGAGGAAGAGGAAGAAGCGCCGGGACACTTCGGCACCAAAAAGAGAAAAA
Marchantia polymorpha subsp. ruderalis Tak-1 DNA, chromosome: 4.
AP019869.1:4502679-4502698
AAGAAGAGGAGACCTTCTCGTCGGAGGAGG4502679AGAGGAAGAGGAAGAAGCGCGGGGCAGCAAAGAAGAAAGGCCAAAGACGA
Marchantia polymorpha subsp. ruderalis Tak-2 DNA, chromosome: U.
AP024465.1:2325512-2325531
AAGAAGAGGAGACCTCCTCGTCGGAGGAGG2325512AGAGGAAGAGGAAGAAGCGCGGGGCAGCAAAGAAGAAAGGCCAAAGACGA
Rhizoctonia solani strain AG-1 IA isolate XN chromosome 1.
CP059658.1:1681600-1681619
TGATGAAGAAGAGGATGAGGAAGAGGACGA1681600AGAGGAAGAGGAAGAAGCGCAGCACAGGACAGAAGACTACGTCGCTGGCG
Trichoderma asperellum DQ-1 chromosome 4, complete sequence.
CP072833.1:3144241-3144260
TCAAGCTGAAGACGAAGTAGAGGGAGAGGA3144241AGAGGAAGAGGAAGAAGCGCAAGAAGAAGTGGATGACGGCGAAGTAGAAG
Jasminum sambac cultivar Hutoumoli linkage group Lg10.
CP073641.1:21408483-21408502
CACGGCCGAGGAGGAAGCGAGACGTCAGGC21408483AGAGGAAGAGGAAGAAGCGCGAAAAAGAGTTGTTTTGATTAATCGGAGAA
Musa troglodytarum cultivar karat chromosome 10.
CP097503.1:17099721-17099740
GAGGAAGAGGAAGGAGGAAGAGGAAGAGGA17099721AGAGGAAGAGGAAGAAGCGCAGAAGGAGAGGAGGAATACCTATGTGCACG
Rhizoctonia solani strain AG1-IA_HG81 chromosome 1.
CP102643.1:2035589-2035608
TGATGACGAAGAGGATGAAGAGGAAGATGA2035589AGAGGAAGAGGAAGAAGCGCAGCACAGGACAGAAGACTACGTCGCTGGCG
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:32751694-32751713
AGAAGAAGAAGAAGAAGAAGAAGGAGAGGA32751694AGAGGAAGAGGAAGAAGCGCGTTCGATGGTGAACGAGTTGGCTCAGTTGG
Brassica rapa genome, scaffold: A04.
LR031576.1:20280536-20280555
AGCCGGAGAGCTTCTGTGTCGGAACAAAGA20280536AGAGGAAGAGGAAGAAGCGCCGGAATGTCCGATGGTAGATGGTTCGCCTG
Triticum aestivum genome assembly, chromosome: 2B.
LR862512.1:683419904-683419923
CAAATGCAACGTAGGTGGACGAGCGGGGGA683419904AGAGGAAGAGGAAGAAGCGCAAGCGACTGGGCCGACACGCAGTGGAGAAA
Triticum aestivum genome assembly, chromosome: 6B.
LR862524.1:599892211-599892230
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG599892211AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR862545.1:589826399-589826418
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG589826399AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 2B.
LR862554.1:692656644-692656663
CAAATGCAACGTAGGTGGACGAGCGGGGGA692656644AGAGGAAGAGGAAGAAGCGCAAGCGACTGGGCCGACACGCAGTGGAGAAA
Triticum aestivum genome assembly, chromosome: 6B.
LR862566.1:598147502-598147521
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG598147502AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR865474.1:592918501-592918520
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG592918501AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCAGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR865495.1:589799160-589799179
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG589799160AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCAGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR865516.1:613563665-613563684
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG613563665AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR865755.1:597480652-597480671
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG597480652AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCAGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR865776.1:582824353-582824372
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG582824353AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
LR877325.1:591287674-591287693
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG591287674AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCAGAGCT
Triticum aestivum genome assembly, chromosome: 2B.
LR878439.1:686240823-686240842
CAAATGCAACGTAGGTGGACGAGCGGGGGA686240823AGAGGAAGAGGAAGAAGCGCAAGCGACTGGGCCGACACGCAGTGGAGAAA
Triticum aestivum genome assembly, chromosome: 6B.
LR878451.1:600641897-600641916
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG600641897AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Allium cepa genome assembly, chromosome: 2.
LR994630.1:40593781-40593800
ATTAAAGGACAACAAAGAAGAAGAAGAAGA40593781AGAGGAAGAGGAAGAAGCGCAAATGGATGAAGACGATAAAGCTATTTGCA
Allium cepa genome assembly, chromosome: 5.
LR994633.1:32125955-32125974
TCCATTAGAGGACGAAGAAGAAGAAGAAGA32125955AGAGGAAGAGGAAGAAGCGCAAGTAGAAGAGGACGATAATGTTGTTTGTG
Allium cepa genome assembly, chromosome: 5.
LR994633.1:32139008-32139027
TCCATTAGAGGACGAAGAAGAAGAAGAAGA32139008AGAGGAAGAGGAAGAAGCGCAAGTAGAAGAGGACGATAATGTTGTTTGTG
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:20874198-20874217
AGCCGGAGAGCTTCTGTGTCGGAACAAAGA20874198AGAGGAAGAGGAAGAAGCGCCGGAATGTCCGATGGTAGATGGTTCGCCTG
Triticum aestivum genome assembly, chromosome: 2B.
LS992084.1:683386413-683386432
CAAATGCAACGTAGGTGGACGAGCGGGGGA683386413AGAGGAAGAGGAAGAAGCGCAAGCGACTGGGCCGACACGCAGTGGAGAAA
Triticum aestivum genome assembly, chromosome: 6B.
LS992096.1:604875799-604875818
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG604875799AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 2B.
OU015725.1:687885136-687885155
CAAATGCAACGTAGGTGGACGAGCGGGGGA687885136AGAGGAAGAGGAAGAAGCGCAAGCGACTGGGCCGACACGCAGTGGAGAAA
Triticum aestivum genome assembly, chromosome: 6B.
OU015737.1:618406581-618406600
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG618406581AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
OU343181.1:620643072-620643091
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG620643072AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCAGAGCT
Triticum aestivum genome assembly, chromosome: 6B.
OU963888.1:628966276-628966295
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG628966276AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Arachnomyces peruvianus genome assembly, chromosome: 5.
OX453236.1:658838-658857
ACGTTGAAGAAAAGCGAAGCGAAGCGAGGA658838AGAGGAAGAGGAAGAAGCGCTGTCAATTCTCTGTATGAGACCCGTACTGT
Bromus sterilis genome assembly, chromosome: 5.
OX465599.1:20443258-20443277
GGACCAAGAACTGAAGCCGGAGGACGAGGA20443258AGAGGAAGAGGAAGAAGCGCCGCCGCCGGCGAACGCGCTGATGCTGATGC
Triticum aestivum genome assembly, chromosome: 2B.
OX637229.1:540919049-540919068
CAAATGCAACGTAGGTGGACGAGCGGGGGA540919049AGAGGAAGAGGAAGAAGCGCAAGCGACTGGGCCGACACGCAGTGGAGAAA
Triticum aestivum genome assembly, chromosome: 6B.
OX637241.1:496110211-496110230
CGGTGGCGGAGCTGTCGAGCTTGAGCGGTG496110211AGAGGAAGAGGAAGAAGCGCGGAAGGGGAAAAGAGAAGGACCCCGGAGCT
Sphagnum contortum genome assembly, chromosome: 10.
OY987285.1:9876181-9876200
AAGAAAGAAAGAAAAAAAGGCAGCGCAAGA9876181AGAGGAAGAGGAAGAAGCGCAAGAAGCCGAACAACCACGAAGACAAAATT
Xanthomonas albilineans strain Xa-FJ1 chromosome, complete genome.
CP046570.1:1301867-1301886
CGTCGGTAAGGGCGCGGCGGCGCCAAAGAA1301867AGAGGAAGAGGAAGAAGCGCGCAAGTCCTGATCGCGCATGGCATCGCGCG
Xanthomonas albilineans strain Xa26 chromosome, complete genome.
CP090970.1:1352018-1352037
CGTCGGTAAGGGCGCGGCGGCGCCAAAGAA1352018AGAGGAAGAGGAAGAAGCGCGCAAGTCCTGATCGCGCATGGCATCGCGCG
Xanthomonas albilineans strain Xa21 chromosome, complete genome.
CP090971.1:1411171-1411190
CGTCGGTAAGGGCGCGGCGGCGCCAAAGAA1411171AGAGGAAGAGGAAGAAGCGCGCAAGTCCTGATCGCGCATGGCATCGCGCG
Xanthomonas albilineans strain Xa11 chromosome, complete genome.
CP090972.1:1412286-1412305
CGTCGGTAAGGGCGCGGCGGCGCCAAAGAA1412286AGAGGAAGAGGAAGAAGCGCGCAAGTCCTGATCGCGCATGGCATCGCGCG
Xanthomonas albilineans strain Xa04 chromosome, complete genome.
CP090973.1:1302143-1302162
CGTCGGTAAGGGCGCGGCGGCGCCAAAGAA1302143AGAGGAAGAGGAAGAAGCGCGCAAGTCCTGATCGCGCATGGCATCGCGCG
Stenotrophomonas sp. 24(2023) chromosome, complete genome.
CP133160.1:3512047-3512066
GGCCAAGGGCCAGCAGGCGCCGCAGCGTGA3512047AGAGGAAGAGGAAGAAGCGCGCAAGAAGCGCTGATCCCCGACCGTCGTTT
Xanthomonas albilineans GPE PC73 complete genome.
FP565176.1:1349404-1349423
CGTCGGTAAGGGCGCGGCGGCGCCAAAGAA1349404AGAGGAAGAGGAAGAAGCGCGCAAGTCCTGATCGCGCATGGCATCGCGCG
Chitinophaga pinensis isolate 3 genome assembly, chromosome: 1.
LR632930.1:4131391-4131410
GCTGGGGAAGTATTGGGCCTGCGAGAGCAC4131391AGAGGAAGAGGAAGAAGCGCTGCGCGTATTTTACGCCGGCCATGAAGGAG
Harmonia axyridis genome assembly, chromosome: 3.
OU611929.1:3730572-3730591
AAATTGAAAGGTGGGCACTTCATAATAAGA3730572AGAGGAAGAGGAAGAAGCGCCGTTGATTCTTGCGCCTATTGCGCCCCTAT
Ichneumon xanthorius genome assembly, chromosome: 7.
OU824206.1:4462261-4462280
CGCCGGCCGACTGGGTTCGAGGGCTGACGA4462261AGAGGAAGAGGAAGAAGCGCGGTGGTGGAAGAAGCTCGGCGGTCGGTGCG
Apeira syringaria genome assembly, chromosome: 13.
OW203667.1:15657246-15657265
AATGACTGATTATTTTTGGCTCAGTCATTT15657246AGAGGAAGAGGAAGAAGCGCTCGCAAGGTGTAAAGACATACCTATAACAA
Meconema thalassinum genome assembly, chromosome: 2.
OX336390.1:886750714-886750733
GTTCTTCACGATCAGCCATTACTACTCTGT886750714AGAGGAAGAGGAAGAAGCGCGGCCGGTTGCTATGACAATGGCTTGTATAC
Volucella bombylans genome assembly, chromosome: 3.
OX422142.1:165669858-165669877
TTGATGGCGCCCCTTCAGATATTAAGCGGT165669858AGAGGAAGAGGAAGAAGCGCCCACAGTGCTCATCACCCTTTCTATTGCTT
Pseudoips prasinana genome assembly, chromosome: 25.
OX621259.1:21329133-21329152
AGTCCCGAGACAGAGTCCAACCGAAGAGGA21329133AGAGGAAGAGGAAGAAGCGCAAAAACCGCACTTCTCCTACAGCAACAACA
Eristalinus aeneus genome assembly, chromosome: 5.
OY019134.1:13024371-13024390
AAGAAGAAGCTAGGCAGCGTCAAAAGAAGA13024371AGAGGAAGAGGAAGAAGCGCAGCTCGGCAGCTCGAAAGAGGTGGTGCCGT
Exephanes ischioxanthus genome assembly, chromosome: 1.
OY294015.1:4434314-4434333
CGCCGGCCGACTGGGTTCGAGGGCTGACGA4434314AGAGGAAGAGGAAGAAGCGCGATGGTGGAAGAAGCTCGGCCGTTCGTGCG
Caenorhabditis afra genome assembly, chromosome: X.
OY751537.1:4279641-4279660
GAAAAAAAGAGACGTTGGGAGTTGGAAAGA4279641AGAGGAAGAGGAAGAAGCGCGATTCTTGATCGCCCAGCCAGTGCCCACCA
Amblyjoppa fuscipennis genome assembly, chromosome: 3.
OY754490.1:8473603-8473622
CGCTGGCCGACTGGGTTCGAGGGCTGACGA8473603AGAGGAAGAGGAAGAAGCGCGGTGGTGGAAGAAGCTCGCGCGGTTCGTGC
Lamellibrachia columna genome assembly, chromosome: 1.
OY759261.1:57007469-57007488
CAATGAGGGAGGAAATAACAACGATGACGA57007469AGAGGAAGAGGAAGAAGCGCACGAACGAGAAGACGAGAGGTGCGTCATCA
Amblyjoppa proteus genome assembly, chromosome: 3.
OY998230.1:583147-583166
CCGTGCAGGAGAGGGAGAAGAGGAAGATAA583147AGAGGAAGAGGAAGAAGCGCATCCAGAGGAACGGAGAGAGACATAGAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGAGGAAGAGGAAGAAGCGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGGAAGAGGAAGAAGCGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.320 | 0.312 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGGAAGAGGAAGAAGCGC&k=0&no_gap=0&offset=0&limit=50
0.385 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=GCGCTTCTTCCTCTTCCTCT&k=0&no_gap=0&offset=0&limit=0
0.385 | 0.000 | cgi_end;

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