GGGenome | Results

データベース：

ミスマッチ/ギャップを許容ミスマッチのみ許容：塩基まで (検索する配列長の25%まで)
双方向を検索＋方向のみ検索－方向のみ検索

2026-01-08 10:41:31, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

WO 2016010068-A/14: Method for identification and breeding of clubroot resistant broccoli.
HZ474187.1:1-21

1AGAGTTCGCATACTCTGGAGC

JP 2016021907-A/14: The method for identification of clubroot resistance in Brassica plants.
HZ489478.1:1-21

1AGAGTTCGCATACTCTGGAGC

Sequence 367 from Patent WO2012088289.
JA818030.1:1-21

1AGAGTTCGCATACTCTGGAGC

Sequence 367 from patent US 9702013.
KH919557.1:1-21

1AGAGTTCGCATACTCTGGAGC

Sequence 367 from patent US 10590490.
MO959834.1:1-21

1AGAGTTCGCATACTCTGGAGC

BNARO6GH_T3_028_E06_08DEC2006_040 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES912880.1:679-699

GTAGACATCACTCTTCTCATTCAGAAGACC679AGAGTTCGCATACTCTGGAGCTACATAGCCAAAGGTACCCATAACTCGAGT

0164361 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163381.1:694-714

GTAGACATCACTTTTCTCATTCAGAAGACC694AGAGTTCGCATACTCTGGAGCTACATAACCAAAGGTGCCC

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14139.
FX696637.1:734-754

GTAGACATCACTTTTCTCATTCAGAAGACC734AGAGTTCGCATACTCTGGAGCTACATAACCAAAGGTACCCATTACTCTAGT

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_23801.
FX737637.1:41-61

ATAGACATCACTCTTCTCATTCAGAAGACC41AGAGTTCGCATACTCTGGAGCTACATAACCAAAGGTACCCATTACTCTAGT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH029F06, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC241115.1:38946-38966

ATAGACATCACTCTTCTCATTCAGAAGACC38946AGAGTTCGCATACTCTGGAGCTACATAACTGAAAGCAAGACAACAAGTTAT

Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:74305448-74305468

GTAGACATCACTCTTCTCATTCAGAAGACC74305448AGAGTTCGCATACTCTGGAGCTACATAGCTGAAAGCAAGAAGACACATTAT

Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:59151375-59151395

ATAGACATCACTTTTCTCATTCAGAAGACC59151375AGAGTTCGCATACTCTGGAGCTACATAACTGAAAAGTAAAAAAAAGAAACA

Brassica napus genome assembly, chromosome: C09.
HG994373.1:55908940-55908960

ATAGACATCACTTTTCTCATTCAGAAGACC55908940AGAGTTCGCATACTCTGGAGCTACATAACTGAAAAGTAAAAAAAAGAAACA

Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:54126388-54126408

ATAGACATCACTTTTCTCATTCAGAAGACC54126388AGAGTTCGCATACTCTGGAGCTACATAACTGAAAAGTGAAAAAAGAAACAA

Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:20658613-20658633

GTAGACATCACTTTTCTCATTCAAAAGACC20658613AGAGTTCGCATACTCTGGAGCTACATATATACCTGAAAGTAAAAGAAACAA

Brassica nigra genome assembly, chromosome: 2.
OZ173172.1:35986604-35986624

GTAGACATCACTTTTCTCATTCAGAAGACC35986604AGAGTTCGCATACTCTGGAGCTACATAACTGAAAGTAAAAAGAAACCAAGT

WO 2016010068-A/4: Method for identification and breeding of clubroot resistant broccoli.
HZ474177.1:129-149

TNGTTTCTTTTNTCACTTCTCAGTTATGTA129GCTCCAGAGTATGCGAACTCTGATCTTCTGAATGAGAAAAGTGATGTCTAT

JP 2016021907-A/4: The method for identification of clubroot resistance in Brassica plants.
HZ489468.1:129-149

TNGTTTCTTTTNTCACTTCTCAGTTATGTA129GCTCCAGAGTATGCGAACTCTGATCTTCTGAATGAGAAAAGTGATGTCTAT

Sequence 121 from Patent WO2012088289.
JA817784.1:129-149

TNGTTTCTTTTNTCACTTCTCAGTTATGTA129GCTCCAGAGTATGCGAACTCTGATCTTCTGAATGAGAAAAGTGATGTCTAT

Sequence 121 from patent US 9702013.
KH919311.1:129-149

TNGTTTCTTTTNTCACTTCTCAGTTATGTA129GCTCCAGAGTATGCGAACTCTGATCTTCTGAATGAGAAAAGTGATGTCTAT

Sequence 121 from patent US 10590490.
MO959588.1:129-149

TNGTTTCTTTTNTCACTTCTCAGTTATGTA129GCTCCAGAGTATGCGAACTCTGATCTTCTGAATGAGAAAAGTGATGTCTAT

Brassica oleracea var. viridis mRNA, clone: KALE-018E16, 5' end sequence.
DK462543.1:474-494

ACTAGAGTTATGGGTACCTTTGGTTATGTA474GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAT

Brassica oleracea var. viridis mRNA, clone: KALE-001G07, 3' end sequence.
DK515730.1:70-90

ACTCGAGTTATGGGTACCTTTGGCTATGTA70GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica oleracea var. viridis mRNA, clone: KALE-054B07, 3' end sequence.
DK535817.1:58-78

ACTCGAGTTATGGGTACCTTTGGCTATGTA58GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica oleracea var. viridis mRNA, clone: KALE-143G10, 3' end sequence.
DK569947.1:43-63

ACTCGAGTTATGGGTACCTTTGGCTATGTA43GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

53COT5_T3_017_F05_04SEP2004_037 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY023941.1:611-631

ACTAGAGTTATGGGTACCTTTGGTTATGTA611GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAA

EST3884 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B181F101, mRNA sequence.
EL626378.1:585-605

ACTAGAGTTATGGGTACCTTTGGTTATGTA585GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTTATA

0165049 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163690.1:155-175

ACTAGAGTAATGGGCACCTTTGGTTATGTA155GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAC

TSA: Raphanus sativus var. sativus RNA, contig: WG3_27550.
FX682761.1:189-209

GAGTTATGGGTACCTTTGGGTATATATGTA189GCTCCAGAGTATGCGAACTCTGGTCTTTTGAATGAGAAAAGTGATGTCTAC

BOHMM58TF BOHM Brassica oleracea genomic clone BOHMM58, genomic survey sequence.
BH568108.1:253-273

ATAATGTGTCTTCTTGCTTTCAGCTATGTA253GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:3673695-3673715

ATAACTTGTTTTGTTGGTTTCAGTTATGTA3673695GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAC

Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:9399832-9399852

TGTTTCTTTTTTTTACTTTTCAGTTATGTA9399832GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAT

Brassica napus cultivar Xiang5A chromosome 3.
CP151898.1:3673738-3673758

ATAACTTGTTTTGTTGGTTTCAGTTATGTA3673738GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAC

Brassica napus cultivar Xiang5A chromosome 13.
CP151908.1:4898818-4898838

ATAATGTGTCTTCTTGCTTTCAGCTATGTA4898818GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica napus genome assembly, chromosome: A03.
HG994357.1:3682922-3682942

ATAACTTGTTTTGTTGGTTTCAGTTATGTA3682922GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAC

Brassica napus genome assembly, chromosome: C03.
HG994367.1:4932618-4932638

ATAATGTGTCTTCTTGCTTTCAGCTATGTA4932618GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica rapa genome, scaffold: A03.
LR031572.1:3627893-3627913

ATAATGTGTCTTCTTGCTTTCAGCTATGTA3627893GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:5005605-5005625

ATAATGTGTCTTCTTGCTTTCAGCTATGTA5005605GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:3638531-3638551

ATAATGTGTCTTCTTGCTTTCAGCTATGTA3638531GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAGAGTGATGTCTAC

Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:22959522-22959542

TTGTTTCTTTTACTTTCAGGTATATATGTA22959522GCTCCAGAGTATGCGAACTCTGGTCTTTTGAATGAGAAAAGTGATGTCTAC

Brassica nigra genome assembly, chromosome: 1.
OZ173171.1:5162527-5162547

ATAACTTGTTTTCTTGCTTTCAGTTATGTA5162527GCTCCAGAGTATGCGAACTCTGGTCTTCTGAATGAGAAAAGTGATGTCTAC

Brassica nigra genome assembly, chromosome: 3.
OZ173173.1:28525997-28526017

AAACAACTTGTTTTTGTTGACAGTTATGTA28525997GCTCCAGAGTATGCGAACTCTGGGCTTTTGAATGAGAAAAGTGATGTCTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAGTTCGCATACTCTGGAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGTTCGCATACTCTGGAGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.519 | 0.510 | search_plus_done; http://172.18.8.135:50800/match?q=AGAGTTCGCATACTCTGGAGC&k=0&no_gap=0&offset=0&limit=50
1.231 | 0.713 | search_minus_done; http://172.18.8.135:50800/match?q=GCTCCAGAGTATGCGAACTCT&k=0&no_gap=0&offset=0&limit=34
1.249 | 0.018 | cgi_end;

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