GGGenome | Results

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2025-04-10 00:06:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Musa acuminata subsp. malaccensis isolate AA chromosome 9.
CP126378.1:42523368-42523387

ACTGCTGCTGCTGCTGCTGCTGCTTTGTTC42523368ACCCTCACCTTCGGCTATCTTTTCTGCTGAGCGACATGTTCTTCGAATCC

Musa acuminata subsp. malaccensis isolate AA chromosome 20.
CP126389.1:42517324-42517343

ACTGCTGCTGCTGCTGCTGCTGCTTTGTTC42517324ACCCTCACCTTCGGCTATCTTTTCTGCTGAGCGACATGTTCTTCGAATCC

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A09.
HG996474.1:42914464-42914483

TTCTCGGCCACTGCTGCTGCTGCTTTGTTC42914464ACCCTCACCTTCGGCTATCTTTTCTGCTGAGCAACATGTTCTTCGAATCC

Musa schizocarpa genome assembly, chromosome: S09.
LS990923.1:48314304-48314323

TCGGCCACTGCTGCTGCTGCTGCTTTGTTC48314304ACCCTCACCTTCGGCTATCTTTTCTGCTGAGCGACATGTTCTTGGAATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.105 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=AGATAGCCGAAGGTGAGGGT&k=0&no_gap=0&offset=0&limit=50
0.134 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=ACCCTCACCTTCGGCTATCT&k=0&no_gap=0&offset=0&limit=50
0.137 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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