GGGenome | Results

2025-04-06 10:07:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Swietenia macrophylla isolate HCNGB_00002344 chromosome 15.
CP135565.1:9700335-9700355

TTTTTAAATATATATACCATTAAAAGACGA9700335AGATATCTGGGGAGACGAAGCCGATCCGGATGAAAGAGATAAAAGCAGCCA

RCRBW79TO Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRBW79, mRNA sequence.
EG666688.1:421-441

ATATATGCTTCCAGAAATGCATCTGGATCG421GCTTCGTCTCCCCAGATATCTGAAAGTATCCTACTCATCATCAAACTTATG

RCRCE31TO Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRCE31, mRNA sequence.
EG669710.1:132-152

ATATATGCTTCCAGAAATGCATCTGGATCG132GCTTCGTCTCCCCAGATATCTGAAAGTATCCTACTCATCATCAAACTTATG

RCRDT57TO Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRDT57, mRNA sequence.
EG678636.1:165-185

ATATATGCTTCCAGAAATGCATCTGGATCG165GCTTCGTCTCCCCAGATATCTGAAAGTATCCTACTCATCATCAAACTTATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=AGATATCTGGGGAGACGAAGC&k=0&no_gap=0&offset=0&limit=50
0.278 | 0.171 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTCGTCTCCCCAGATATCT&k=0&no_gap=0&offset=0&limit=49
0.280 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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