GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 13:06:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Camellia sinensis mRNA, clone: ML25C04, 5' end sequence, expressed in mature leaves.
FS947390.1:654-673
GTAAATTTATACCATGCACAACACACGTGG654AGATCCAAGCGAGTGTCCTAAATGTATTTTTCTGTAGTATGATTGTTTGT
EST2758 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08010904-OUYI_CHAG_31_38.M13+_F05, mRNA sequence.
GE652431.1:695-714
GTAAATTTATACCATGCACAACACACGTGG695AGATCCAAGCGAGTGTCCTAAATGTATTTTTCTGTAGTATGATTGTTTAG
TSA: Camellia sinensis tea_c10830 mRNA sequence.
KA290164.1:828-847
GTAAATTTATACCATGCACAACACACGTGG828AGATCCAAGCGAGTGTCCTAAATGTATTTTTCTGTAGTATGATTGTTTAG
TSA: Camellia sinensis Singletons43930.Casi mRNA sequence.
HP756577.1:227-246
CTAAACAATCATACTACAGAAAAATACATT227TAGGACACTCGCTTGGATCTCCACGTGTGTTGTGCATGGTATAAATTTAC
Tolmerus cingulatus genome assembly, chromosome: 3.
OY390710.1:5015350-5015369
CATTTGGAGGACACTCTTCTGGGGCATCTC5015350TAGGACACTCGCTTGGATCTCTAGGGGGAGCCTCTTTCGGAGGAGGTCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGATCCAAGCGAGTGTCCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGATCCAAGCGAGTGTCCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.288 | 0.279 | search_plus_done; http://172.18.8.135:50400/match?q=AGATCCAAGCGAGTGTCCTA&k=0&no_gap=0&offset=0&limit=50
0.319 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGACACTCGCTTGGATCT&k=0&no_gap=0&offset=0&limit=47
0.321 | 0.001 | cgi_end;

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