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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-05 20:50:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens BAC clone RP11-479O9 from 7, complete sequence.
AC073107.7:100404-100421
AACGCCAGAGGTGGAGTTTGCAATGAGCCG100404AGATCGTGTCTCTGCTCTGCAGCCTGGGTGATAGAGCGAGACTCCATC
Homo sapiens BAC clone RP13-157F18 from 7, complete sequence.
AC104057.4:180807-180824
AACGCCAGAGGTGGAGTTTGCAATGAGCCG180807AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Homo sapiens DNA, chromosome 7, nearly complete genome.
AP023467.1:64391861-64391878
AACGCCAGAGGTGGAGTTTGCAATGAGCCG64391861AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Homo sapiens isolate CHM13 chromosome 7.
CP068271.2:66950075-66950092
AACGCCAGAGGTGGAGTTTGCAATGAGCCG66950075AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Homo sapiens isolate NA24385 chromosome 7.
CP139514.1:67056288-67056305
AACGCCAGAGGTGGAGTTTGCAATGAGCCG67056288AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Homo sapiens isolate NA24385 chromosome 7.
CP139537.1:66216582-66216599
AACGCCAGAGGTGGAGTTTGCAATGAGCCG66216582AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Sciurus vulgaris genome assembly, chromosome: 14.
LR738625.1:19418888-19418905
GTGCCTGTCCATGAAAGTGAACAGTTTCTC19418888AGATCGTGTCTCTGCTCTTTTGCAGGGTTGGCAAAACGTGTGGGTGCC
Martes martes genome assembly, chromosome: 11.
OY734074.1:60049675-60049692
AAGACTTAAGCATAAGTCCAAGCATAAGTC60049675AGATCGTGTCTCTGCTCTGCTCAAAACCCTCCAGAGCCCTCAGCTCAT
Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:700344452-700344469
ACATGGTATCTTGGGGGAAGAGGGTCCCGA700344452AGATCGTGTCTCTGCTCTGAAGAAAAGCCCTGTGCATCAGGACTATGA
Rhinatrema bivittatum genome assembly, chromosome: 7.
LR584393.1:36032168-36032185
TCTTGGGGGGAGAGGGTCCCCAGGTCCCAA36032168AGATCGTGTCTCTGCTCTGAAGAAAAGCCCTGTGCAATCAGGACTATG
Eukaryotic synthetic construct chromosome 7.
CP034506.1:65182889-65182906
AACGCCAGAGGTGGAGTTTGCAATGAGCCG65182889AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Eukaryotic synthetic construct chromosome 7.
CP034531.1:65182889-65182906
AACGCCAGAGGTGGAGTTTGCAATGAGCCG65182889AGATCGTGTCTCTGCTCTCCAGCCTGGGTGATAGAGCGAGACTCCATC
Picea glauca clone GQ0252_P22 mRNA sequence.
BT103441.1:208-225
ACGAACGCTTTTTCTCCAAAGTCGGAGCAC208AGATCGTGTCTCTGCTCTCCCACCACTCACGAGGGCTCTTTTCGTTGC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:5359652-5359669
ACAAAACGACGTCTCGGAGATTGAAATTAA5359652AGATCGTGTCTCTGCTCTCTCTTCCTTCAAAATCCGATTTCAGACAAC
Solanum dulcamara genome assembly, chromosome: 10.
OX359261.1:72003112-72003129
AAAAAAAAATAATCATAAATTTCAAATTCT72003112AGATCGTGTCTCTGCTCTCTAACGTAACTCTTTTCAATTTCATGATCT
Microdon myrmicae genome assembly, chromosome: 4.
OZ007499.1:48155840-48155857
TTCTACTTTTGCACACAGGACAACCAATAG48155840AGATCGTGTCTCTGCTCTCTCATTGTCACGCCCGTCGAAGTATGGTGA
Pan troglodytes BAC clone CH251-114G16 from chromosome 7, complete sequence.
AC183835.2:167620-167637
GATGGAGTCTCGCTCTATCACCCAGGCTGG167620AGAGCAGAGACACGATCTCGGCTCACTGCAAACTCCACCTCTGGCGTT
Pan troglodytes BAC clone CH251-340I24 from chromosome 7, complete sequence.
AC185242.2:54493-54510
GATGGAGTCTCGCTCTATCACCCAGGCTGG54493AGAGCAGAGACACGATCTCGGCTCACTGCAAACTCCACCTCTGGCGTT
Onychomys leucogaster genome assembly, chromosome: 18.
OX460388.1:74507059-74507076
GCCTCTCATCAGAAATTCCAGATTTCTCTT74507059AGAGCAGAGACACGATCTCCCATGACTGGGCCCTTGGTCCATTGGTCA
Peromyscus eremicus genome assembly, chromosome: 15.
OX460409.1:41881522-41881539
TCCTCTGAGACAAGACAGTGGAGGGTGTGG41881522AGAGCAGAGACACGATCTGACTCTCATCTGACGACTATTTTGGCATCT
Onychomys leucogaster genome assembly, chromosome: 18.
OX460435.1:69431838-69431855
GCCTCTCATCAGAAATTCCAGATTTCTCTT69431838AGAGCAGAGACACGATCTCCCATGACTGGGCCCTTGGTCCATTGGTCA
Peromyscus eremicus genome assembly, chromosome: 15.
OX460481.1:41661044-41661061
TCCTCTGAGACAAGACAGTGGAGGGTGTGG41661044AGAGCAGAGACACGATCTGACTCTCATCTGACGACTATTTTGGCATCT
Meles meles genome assembly, chromosome: 10.
OV277451.1:49522322-49522339
ATGAGCTGAGGGCTCTGGAGGGTTTTGAGC49522322AGAGCAGAGACACGATCTGACTTATGCTTGGACTTATGCTTAAGTCTT
Rhinatrema bivittatum genome assembly, chromosome: 14.
LR584400.1:55552255-55552272
TCATAGTCCTGATGCACAGGGCTTTTCTTC55552255AGAGCAGAGACACGATCTTCAGGACCTGGGGACCCTCTCCCCCCAAGA
Xyrichtys novacula genome assembly, chromosome: 22.
OY660885.1:287584-287601
GTCAACACGGCGTCTACGCAGAGGTGATGA287584AGAGCAGAGACACGATCTGAGAATCTGATGGAGGGAGACCAGAGTATA
WS00812.B21_M15 WS-X-N-A-9 Picea glauca cDNA clone WS00812_M15 3', mRNA sequence.
CO251088.1:474-491
GCAACGAAAAGAGCCCTCGTGAGTGGTGGG474AGAGCAGAGACACGATCTGTGCTCCGACTTTGGAGAAAAGCGTTCGTC
GQ0252.B7_P22 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0252_P22 3', mRNA sequence.
CO487785.2:424-441
GCAACGAAAAGAGCCCTCGTGAGTGGTGGG424AGAGCAGAGACACGATCTGTGCTCCGACTTTGGAGAAAAAGCGTTCGT
BOT01-2D8TF BOT01 Brassica oleracea genomic clone BOT01-2D8, genomic survey sequence.
FI678782.1:112-129
GTTGTCTGAAATCGGATTTTGAAGGAAGAG112AGAGCAGAGACACGATCTTTAATTTCAATCTCCGAGACGTCGTTTTGT
BOT01-61O10TR BOT01 Brassica oleracea genomic clone BOT01-61O10, genomic survey sequence.
FI721726.1:79-96
GTTGTCTGAAATCGGATTTTGAAGGAAGAG79AGAGCAGAGACACGATCTTTAATTTCAATCTCCGAGACGTCGTTTTGT
BOT01-78D4TR BOT01 Brassica oleracea genomic clone BOT01-78D4, genomic survey sequence.
FI732574.1:78-95
GTTGTCTGAAATCGGATTTTGAAGGAAGAG78AGAGCAGAGACACGATCTTTAATTTCAATCTCCGAGACGTCGTTTTGT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:48119490-48119507
GTTGTCTGAAATCGGATTTTGAAGGAAGAG48119490AGAGCAGAGACACGATCTTTAATTTCAATCTCCGAGACGTCGTTTTGT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:47089786-47089803
GTTGTCTGAAATCGGATTTTGAAGGAAGAG47089786AGAGCAGAGACACGATCTTTAATTTCAATCTCCGAGACGTCGTTTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGATCGTGTCTCTGCTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGATCGTGTCTCTGCTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.364 | 0.355 | search_plus_done; http://172.18.8.135:50400/match?q=AGATCGTGTCTCTGCTCT&k=0&no_gap=0&offset=0&limit=50
0.647 | 0.283 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGCAGAGACACGATCT&k=0&no_gap=0&offset=0&limit=34
0.657 | 0.010 | cgi_end;

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