GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:12:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH02001G04 JH-201 Capsicum annuum cDNA 5', mRNA sequence.
CO775942.1:107-126
CGATCCAGTGTGGGATGTCGATATTTTATG107AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAGTGAGAGT
BJ02001E11 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO906367.1:107-126
CGATCCAGTGTGGGATGTCGATATTTTATG107AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAGTGAGAGT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:80878299-80878318
CGATCCAATGTGGGATGTCACTATTTTACG80878299AGATGACGTACGGGAACTGCAGAGGTAGGTACATGATATATAGTGGGATT
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:192534012-192534031
CGATCCAGTGTGGGATTTCACTATTTTACG192534012AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAGTTGGATT
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:260566774-260566793
CGATCCAGTGTGGGATGTCGATATTTTATG260566774AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAGTGAGAGT
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:260586750-260586769
CGATCCAGTGTGGGATGTCGATATTTTATG260586750AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAGTGAGAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:27075574-27075593
CGATCTAGTGTGGGATGTCGCTATTTTACG27075574AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAATAGGAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:15106934-15106953
CGATCTAGTGTGGGATGTCGCTATTTTACG15106934AGATGACGTACGGGAACTGCAAAGGAAGGTACATGATATACAGTGGGAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:81119011-81119030
CGATCCAATGTGGGATGTCACTATTTTACG81119011AGATGACGTACGGGAACTGCAGAGGTAGGTACATGATATATAGTGGGATT
Solanum tuberosum clone AT_105.Z microsatellite sequence.
GQ415736.1:107-126
CGATCCAGTGTGGGATGTCGATATTTTATG107AGATGACGTACGGGAACTGCAGAGGCAGGTACATGATATACAGTGAGAGT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:76847279-76847298
ACTTCTATTGTATATCATGTACCTACCTCT76847279GCAGTTCCCGTACGTCATCTCGTAAAATAGCGACATCCTACATTGGATTG
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:239168787-239168806
ACTCCTATTGTATATCATGTACCTGCCTCT239168787GCAGTTCCCGTACGTCATCTCGTAAAATAGCGACATCCCACACTAGATCG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:17227477-17227496
ACTCTCACTGTATATCATGTACCTGCCTCT17227477GCAGTTCCCGTACGTCATCTCATAAAATATCGACATCCACACTAGATCGC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:74270217-74270236
AATCCAACTGTATATCATGTACCTGCCTCT74270217GCAGTTCCCGTACGTCATCTCGTAAAATAGTGAAATCCCACACTGGATCG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:77152040-77152059
ACTTCTATTGTATATCATGTACCTACCTCT77152040GCAGTTCCCGTACGTCATCTCGTAAAATAGCGACATCCTACATTGGATTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGATGACGTACGGGAACTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGATGACGTACGGGAACTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.251 | 0.242 | search_plus_done; http://172.18.8.135:50400/match?q=AGATGACGTACGGGAACTGC&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGTTCCCGTACGTCATCT&k=0&no_gap=0&offset=0&limit=40
0.293 | 0.003 | cgi_end;

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