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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 01:55:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS02713.C21_J11 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02713_J11 5, mRNA sequence.
DR523095.1:428-447
TCAGTATGTAGAAGCTCAGTCAAATATAGG428AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS02743.C21_N01 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02743_N01 5, mRNA sequence.
DR534600.1:427-446
TCAGTATGTAGAAGCTCAGTCAAATATAGG427AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS0412.C21_B18 SS-NE-A-26 Picea sitchensis cDNA clone WS0412_B18 3', mRNA sequence.
ES667285.1:604-623
TCAGTATGTAGAAGCTCAGTCAAATATAGG604AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS04211.C21_P07 SS-NE-27 Picea sitchensis cDNA clone WS04211_P07 3', mRNA sequence.
ES669598.1:412-431
TCAGTATGTAGAAGCTCAGTCAAATATAGG412AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS0425.C21_B09 SS-NE-27 Picea sitchensis cDNA clone WS0425_B09 3', mRNA sequence.
ES670302.1:637-656
TCAGTATGTAGAAGCTCAGTCAAATATAGG637AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS0426.C21_C10 SS-NE-27 Picea sitchensis cDNA clone WS0426_C10 3', mRNA sequence.
ES670659.1:418-437
TCAGTATGTAGAAGCTCAGTCAAATATAGG418AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS02775.CR_J20 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02775_J20 3', mRNA sequence.
ES858599.1:444-463
TCAGTATGTAGAAGCTCAGTCAAATATAGG444AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS04216.C21_G24 SS-NE-27 Picea sitchensis cDNA clone WS04216_G24 3', mRNA sequence.
FD740962.1:426-445
TCAGTATGTAGAAGCTCAGTCAAATATAGG426AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS04224.C21_L08 SS-NE-27 Picea sitchensis cDNA clone WS04224_L08 3', mRNA sequence.
FD743948.1:396-415
TCAGTATGTAGAAGCTCAGTCAAATATAGG396AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS02775.C21_J20 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02775_J20 5', mRNA sequence.
GW720717.1:455-474
TCAGTATGTAGAAGCTCAGTCAAATATAGG455AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
Picea glauca clone GQ0252_P22 mRNA sequence.
BT103441.1:411-430
TCAGTATGTAGAAGCTCAGTCAAATATAGC411AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
Picea sitchensis clone WS02713_J11 unknown mRNA.
EF085483.1:431-450
TCAGTATGTAGAAGCTCAGTCAAATATAGG431AGATGCCTTTTGTACTAGTGGCCTGACCTCTGATAACCCAACCACTGTAC
WS00910.B21_O19 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00910_O19 3', mRNA sequence.
CO206353.1:277-296
GTACAGTGGTTGGGTTATCAGAGGTCAGAC277CACTAGTACAAAAGGCATCTGCTATATTTGACTGAGCTTCTACATACTGA
WS00812.B21_M15 WS-X-N-A-9 Picea glauca cDNA clone WS00812_M15 3', mRNA sequence.
CO251088.1:275-294
GTACAGTGGTTGGGTTATCAGAGGTCAGGC275CACTAGTACAAAAGGCATCTGCTATATTTGACTGAGCTTCTACATACTGA
GQ0252.B7_P22 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0252_P22 3', mRNA sequence.
CO487785.2:219-238
GTACAGTGGTTGGGTTATCAGAGGTCAGGC219CACTAGTACAAAAGGCATCTGCTATATTTGACTGAGCTTCTACATACTGA
WS02713.CR_J11 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02713_J11 3, mRNA sequence.
DR505196.1:221-240
GTACAGTGGTTGGGTTATCAGAGGTCAGGC221CACTAGTACAAAAGGCATCTCCTATATTTGACTGAGCTTCTACATACTGA
WS02743.CR_N01 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02743_N01 3, mRNA sequence.
DR516583.1:279-298
GTACAGTGGTTGGGTTATCAGAGGTCAGGC279CACTAGTACAAAAGGCATCTCCTATATTTGACTGAGCTTCTACATACTGA
WS0328.C21_P06 WS-MC-N-A-20 Picea glauca cDNA clone WS0328_P06 3, mRNA sequence.
DR556514.1:275-294
GTACAGTGGTTGGGTTATCAGAGGTCAGGC275CACTAGTACAAAAGGCATCTGCTATATTTGACTGAGCTTCTACATACTGA
65-2-33-F12.r.1 Non-normalized library of 1 month old bare root Picea abies cDNA, mRNA sequence.
GT886793.1:329-348
GTACAGTGGTTGGGTTATCAGAGGTCAGGC329CACTAGTACAAAAGGCATCTCCTATATTTGACTGAGCTTCTACATACTGA
65-2-45-E01.r.1 Non-normalized library of 1 month old bare root Picea abies cDNA, mRNA sequence.
GT887463.1:321-340
GTACAGTGGTTGGGTTATCAGAGGTCAGGC321CACTAGTACAAAAGGCATCTCCTATATTTGACTGAGCTTCTACATACTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGATGCCTTTTGTACTAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGATGCCTTTTGTACTAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.673 | 0.664 | search_plus_done; http://172.18.8.135:50400/match?q=AGATGCCTTTTGTACTAGTG&k=0&no_gap=0&offset=0&limit=50
1.069 | 0.396 | search_minus_done; http://172.18.8.135:50400/match?q=CACTAGTACAAAAGGCATCT&k=0&no_gap=0&offset=0&limit=38
1.075 | 0.006 | cgi_end;

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