GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 16:19:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Paenibacillus polymyxa SC2, complete genome.
CP002213.2:2090667-2090686
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2090667AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa SQR-21, complete genome.
CP006872.1:2111613-2111632
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2111613AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain CF05 genome.
CP009909.1:5071651-5071670
CAGAGACGTAATTTGTTTAGTTGCCTCCGC5071651AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain CJX518 chromosome, complete genome.
CP029370.1:2000730-2000749
CAGAGACGTAATTTGTTTAGTTGCTTCCGC2000730AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus sp. M-152 chromosome, complete genome.
CP034141.1:2119717-2119736
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2119717AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain ZF197 chromosome, complete genome.
CP042272.1:220219-220238
CAGTGACGTAATTTGTTTCGTTGCCTCCGC220219AGATTGTTCTGCCAGCTTGCGTACTTCACTGGCTACAACGGCAAAGCCTT
Paenibacillus polymyxa strain EB4 G3 chromosome, complete genome.
CP084033.1:2065310-2065329
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2065310AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain ACCC03434 chromosome, complete genome.
CP126079.1:2118681-2118700
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2118681AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain YL-C1 chromosome.
CP127103.1:2129345-2129364
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2129345AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain C2 chromosome, complete genome.
CP139198.1:2090637-2090656
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2090637AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa M1 main chromosome, complete genome.
HE577054.1:2090782-2090801
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2090782AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain Sb3-1, complete genome.
CP010268.1:684390-684409
AAGGCTTTGCCGTTGTGGCCAATGAAGTAC684390GCAAGCTGGCAGAACAATCTGCGGAAGCAACTAAACAAATTACGTCTCTG
Paenibacillus sp. lzh-N1 chromosome, complete genome.
CP025696.1:5354154-5354173
AAGGCTTTGCCGTTGTGGCCAATGAAGTAC5354154GCAAGCTGGCAGAACAATCTGCGGAGGCAACTAAACAAATTACTTCTTTG
Paenibacillus polymyxa strain ZF129 chromosome, complete genome.
CP040829.1:5479136-5479155
AAGGCTTTGCCGTTGTGGCCAATGAAGTAC5479136GCAAGCTGGCAGAACAATCTGCGGAGGCAACTAAACAAATTACGTCTCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGATTGTTCTGCCAGCTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGATTGTTCTGCCAGCTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=AGATTGTTCTGCCAGCTTGC&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGCTGGCAGAACAATCT&k=0&no_gap=0&offset=0&limit=39
0.150 | 0.002 | cgi_end;

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