GGGenome | Results

2025-04-10 04:01:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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Microcaecilia unicolor genome assembly, chromosome: 3.
LR594634.1:339081997-339082016

CGTAAAAGCAGGTGCACGTTTTTCATTTGC339081997AGATTTTTATGTGTGTCTGCAGTTGCACAATTTAACATAAGCCTTTTCGG

NXLV103_E01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV103_E01 5' similar to Arabidopsis thaliana sequence At3g51240 flavanone 3-hydroxylase (FH3) see http://mips.gsf.de/proj/tha
BQ107716.1:429-448

AAGATCAATTAAAGAAAAATGCATCGATGT429AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTGTCG

Pinus pinaster xylem EST, clone PP077G11.
BX253091.1:179-198

AAGATCAATTAAAGAAAAATGCATCGATGT179AGATTTTTATGTGTGTCTGCCTGGATGCTGTCTGTGTTCATGTGTTCTCC

RTDR1_15_H09.b1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_15_H09_A015 3', mRNA sequence.
CF386540.1:365-384

AAGATCAATTAAAGAAAAATGCATCGATGT365AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDR1_10_G04.b1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_10_G04_A015 3', mRNA sequence.
CF387022.1:407-426

AAGATCAATTAAAGAAAAATGCATCGATGT407AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDR1_17_F11.b1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_17_F11_A015 3', mRNA sequence.
CF387964.1:406-425

AAGATCAATTAAAGAAAAATGCATCGATGT406AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDR2_8_D06.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_8_D06_A021 5', mRNA sequence.
CF389602.1:519-538

AAGATCAATTAAAGAAAAATGCATCGATGT519AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDR3_9_A11.b1_A022 Loblolly pine roots recovering from drought DR3 Pinus taeda cDNA clone RTDR3_9_A11_A022 3', mRNA sequence.
CF391448.1:404-423

AAGATCAATTAAAGAAAAATGCATCGATGT404AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDS2_21_A01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_21_A01_A021 3', mRNA sequence.
CF396254.1:538-557

AAGATCAATTAAAGAAAAATGCATCGATGT538AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDS3_16_D06.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_16_D06_A022 3', mRNA sequence.
CF398761.1:407-426

AAGATCAATTAAAGAAAAATGCATCGATGT407AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTWW1_24_B04.b1_A015 Well-watered loblolly pine roots WW1 Pinus taeda cDNA clone RTWW1_24_B04_A015 3', mRNA sequence.
CF403002.1:405-424

AAGATCAATTAAAGAAAAATGCATCGATGT405AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTDS1_7_D03.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_7_D03_A015 3', mRNA sequence.
CF471840.1:405-424

AAGATCAATTAAAGAAAAATGCATCGATGT405AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTWW2_4_F01.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_4_F01_A021 3', mRNA sequence.
CF473670.1:239-258

AAGATCAATTAAAGAAAAATGCATCGATGT239AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTWW2_4_D02.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_4_D02_A021 3', mRNA sequence.
CF473699.1:312-331

AAGATCAATTAAAGAAAAATGCATCGATGT312AGATTTTTATGTGTGTCTGCCTGGATGCTGTCTGTGTTCATGTGTTCTCG

RTCNT1_2_A04.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_2_A04_A029 3', mRNA sequence.
CF663287.1:426-445

AAGATCAATTAAAGAAAAATGCATCGATGT426AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_7_E05.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_7_E05_A029 3', mRNA sequence.
CF664078.1:442-461

AAGATCAATTAAAGAAAAATGCATCGATGT442AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_12_D12.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_12_D12_A029 3', mRNA sequence.
CF664824.1:319-338

AAGATCAATTAAAGAAAAATGCATCGATGT319AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_13_H06.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_13_H06_A029 3', mRNA sequence.
CF665019.1:183-202

AAGATCAATTAAAGAAAAATGCATCGATGT183AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_19_A07.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_19_A07_A029 3', mRNA sequence.
CF665845.1:663-682

AAGATCAATTAAAGAAAAATGCATCGATGT663AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_26_A01.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_26_A01_A029 3', mRNA sequence.
CF666750.1:405-424

AAGATCAATTAAAGAAAAATGCATCGATGT405AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_28_C12.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_28_C12_A029 3', mRNA sequence.
CF667085.1:426-445

AAGATCAATTAAAGAAAAATGCATCGATGT426AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_45_F02.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_45_F02_A029 3', mRNA sequence.
CF669651.1:423-442

AAGATCAATTAAAGAAAAATGCATCGATGT423AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT1_60_A08.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_60_A08_A029 3', mRNA sequence.
CF671890.1:423-442

AAGATCAATTAAAGAAAAATGCATCGATGT423AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

FLD1_71_B10.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_71_B10_A029 5', mRNA sequence.
CO167837.1:539-558

AAGATCAATTAAAGAAAAATGCATCGATGT539AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTGTCG

NDL1_2_B11.b1_A029 Needles control Pinus taeda cDNA clone NDL1_2_B11_A029 3', mRNA sequence.
CO168716.1:425-444

AAGATCAATTAAAGACTAATGCATCGATGT425AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_11_B08.b1_A029 Needles control Pinus taeda cDNA clone NDL1_11_B08_A029 3', mRNA sequence.
CO169997.1:426-445

AAGATCAATTAAAGAAAAATGCATCGATGT426AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_11_B08.g1_A029 Needles control Pinus taeda cDNA clone NDL1_11_B08_A029 5', mRNA sequence.
CO170071.1:465-484

AAGATCAATTAAAGAAAAATGCATCGATGT465AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_14_D09.b1_A029 Needles control Pinus taeda cDNA clone NDL1_14_D09_A029 3', mRNA sequence.
CO170434.1:614-633

AAGATCAATTAAAGAAAAATGCATCGATGT614AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_14_D09.g1_A029 Needles control Pinus taeda cDNA clone NDL1_14_D09_A029 5', mRNA sequence.
CO170490.1:647-666

AAGATCAATTAAAGAAAAATGCATCGATGT647AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_17_E09.b1_A029 Needles control Pinus taeda cDNA clone NDL1_17_E09_A029 3', mRNA sequence.
CO170828.1:312-331

AAGATCAATTAAAGAAAAATGCATCGATGT312AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_17_E09.g1_A029 Needles control Pinus taeda cDNA clone NDL1_17_E09_A029 5', mRNA sequence.
CO170900.1:706-725

AAGATCAATTAAAGAAAAATGCATCGATGT706AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_30_E04.b1_A029 Needles control Pinus taeda cDNA clone NDL1_30_E04_A029 3', mRNA sequence.
CO172510.1:305-324

AAGATCAATTAAAGAAAAATGCATCGATGT305AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_30_E04.g1_A029 Needles control Pinus taeda cDNA clone NDL1_30_E04_A029 5', mRNA sequence.
CO172593.1:673-692

AAGATCAATTAAAGAAAAATGCATCGATGT673AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_34_B07.b1_A029 Needles control Pinus taeda cDNA clone NDL1_34_B07_A029 3', mRNA sequence.
CO173102.1:440-459

AAGATCAATTAAAGAAAAATGCATCGATGT440AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_35_F07.b1_A029 Needles control Pinus taeda cDNA clone NDL1_35_F07_A029 3', mRNA sequence.
CO173292.1:423-442

AAGATCAATTAAAGAAAAATGCATCGATGT423AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_35_F07.g1_A029 Needles control Pinus taeda cDNA clone NDL1_35_F07_A029 5', mRNA sequence.
CO173374.1:755-774

AAGATCAATTAAAGAAAAATGCATCGATGT755AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTT

NDL1_36_F07.b1_A029 Needles control Pinus taeda cDNA clone NDL1_36_F07_A029 3', mRNA sequence.
CO173441.1:423-442

AAGATCAATTAAAGAAAAATGCATCGATGT423AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_37_C11.b1_A029 Needles control Pinus taeda cDNA clone NDL1_37_C11_A029 3', mRNA sequence.
CO173558.1:541-560

AAGATCAATTAAAGAAAAATGCATCGATGT541AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_44_A07.b1_A029 Needles control Pinus taeda cDNA clone NDL1_44_A07_A029 3', mRNA sequence.
CO174429.1:611-630

AAGATCAATTAAAGAAAAATGCATCGATGT611AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

NDL1_44_A07.g1_A029 Needles control Pinus taeda cDNA clone NDL1_44_A07_A029 5', mRNA sequence.
CO174506.1:674-693

AAGATCAATTAAAGAAAAATGCATCGATGT674AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

GEO1_8_H06.g1_A029 Root gravitropism April 2003 test Pinus taeda cDNA clone GEO1_8_H06_A029 5', mRNA sequence.
CO197760.1:712-731

AAGATCAATTAAAGAAAAATGCATCGATGT712AGATTTTTATGTGTGTCTGCCTGGAT

GEO2_7_H08.b1_A032 Root gravitropism October 2003 test Pinus taeda cDNA clone GEO2_7_H08_A032 3', mRNA sequence.
CO200427.1:703-722

AAGATCAATTAAAGAAAAATGCATCGATGT703AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTCNT2_3_H01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone RTCNT2_3_H01_A029 3', mRNA sequence.
CO201057.1:725-744

AAGATCAATTAAAGAAAAATGCATCGATGT725AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTK1_34_H10.b1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_34_H10_A029 3', mRNA sequence.
CO367454.1:679-698

AAGATCAATTAAAGAAAAATGCATCGATGT679AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

Pinus pinaster root EST, clone RN74H7.
CR394187.1:276-295

AAGATCAATTAAAGAAAAATGCATCGATGT276AGATTTTTATGTGTGTCTGCCTGGATGCTGTCTGTGTTCATGTGTTCTCG

RTNACL1_5_G02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_5_G02_A029 3', mRNA sequence.
CV032036.1:571-590

AAGATCAATTAAAGAAAAATGCATCGATGT571AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTGTCG

RTNACL1_42_F04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_42_F04_A029 5', mRNA sequence.
CV035835.1:276-295

AAGATCAATTAAAGAAAAATGCATCGATGT276AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTNACL1_60_C03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_60_C03_A029 3', mRNA sequence.
CV036554.1:277-296

AAGATCAATTAAAGAAAAATGCATCGATGT277AGATTTTTATGTGTGTCTGCATGGATGCAGTCTGTGTTCATGTGTTCTCG

COLD1_6_C12.b1_A029 Root cold Pinus taeda cDNA clone COLD1_6_C12_A029 3', mRNA sequence.
CX645921.1:426-445

AAGATCAATTAAAGAAAAATGCATCGATGT426AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

COLD1_47_D10.b1_A029 Root cold Pinus taeda cDNA clone COLD1_47_D10_A029 3', mRNA sequence.
CX650650.1:605-624

AAGATCAATTAAAGAAAAATGCATCGATGT605AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

RTPQ1_6_F06.b1_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_6_F06_A032 3', mRNA sequence.
CX712991.1:709-728

AAGATCAATTAAAGAAAAATGCATCGATGT709AGATTTTTATGTGTGTCTGCCTGGATGCAGTCTGTGTTCATGTGTTCTCG

OM__Ba0161B16.f OM__Ba Oryza minuta genomic clone OM__Ba0161B16 5', genomic survey sequence.
CZ623289.1:685-704

CAGTCTTACCTGATACATATGATTATCCTA685AGATTTTTATGTGTGTCTGCCATCTACATGAATGGATTGATGAATATAAA

Pinus radiata flavanone 3-hydroxylase (F3H) mRNA, complete cds.
KF704818.1:1279-1298

AAGAACAATTAACGAAAAATGCATCGATGT1279AGATTTTTATGTGTGTCTGCCTGGATGCTGTCTGTGTTCATGTGTTCTCG

Diatraea saccharalis genome assembly, chromosome: 6.
OU893337.1:11393506-11393525

CTAAAGGTATCTGCTGAAAATACTAAAATG11393506AGATTTTTATGTGTGTCTGCCAATTTTATTCCTAGGCCACTGTTACTTTA

Bimastos eiseni genome assembly, chromosome: 1.
OY365806.1:60143189-60143208

AGACTTTTATACGGTCATGCAATTAGGTTA60143189AGATTTTTATGTGTGTCTGCATTAAGGTCAACACTTCTGTGTAATTTAAT

Thymelicus lineola genome assembly, chromosome: 12.
OZ010692.1:16566107-16566126

ACTTTAAAAGTGGGATGGTCGCCAGGTACA16566107AGATTTTTATGTGTGTCTGCGTTACGTTATTTACATAATTATCTCAATCA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
2.341 | 2.332 | search_plus_done; http://172.18.8.135:50400/match?q=AGATTTTTATGTGTGTCTGC&k=0&no_gap=0&offset=0&limit=50
2.507 | 0.166 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGACACACATAAAAATCT&k=0&no_gap=0&offset=0&limit=0
2.507 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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