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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:01:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus pyrifolia mRNA, contig: contig_25389.
FX402803.1:61-80
GTATTTTGGGCTTCTCTGGTTTCTGAAGAT61AGCAAACTTTCGTGGTTCCGAATTCATGGACCTCCATTGTTTGTGGGTTG
TSA: Pyrus x bretschneideri Unigene60552_XinShao mRNA sequence.
JR648719.1:21-40
CTTCTCTGGTTTCTGAAGAT21AGCAAACTTTCGTGGTTCCGAATTCATGGACCTCCATTGTTTGTGGGTTG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:27302260-27302279
CAACCCAGAAACAATGGAGGTCCATGAATT27302260CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:28440306-28440325
CAACCCAGAAACAATGGAGGTCCATGAATT28440306CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:26295400-26295419
CAACCCAGAAACAATGGAGGTCCATGAATT26295400CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:26846513-26846532
CAACCCAGAAACAATGCAGGTCCATGAATT26846513CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:28086225-28086244
CAACCCAGAAACAATGGAGGTCCATGAATT28086225CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:25856612-25856631
CAACCCAGAAACAATGGAGGTCCATGAATT25856612CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:27995316-27995335
CAACCCAGAAACAATGGAGGTCCATGAATT27995316CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus domestica genome assembly, chromosome: 10.
OU696686.1:27853229-27853248
CAACCCAGAAACAATGGAGGTCCATGAATT27853229CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus domestica genome assembly, chromosome: 10.
OU744551.1:27949301-27949320
CAACCCAGAAACAATGGAGGTCCATGAATT27949301CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus domestica genome assembly, chromosome: 10.
OU744962.1:28680250-28680269
CAACCCAGAAACAATGGAGGTCCATGAATT28680250CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus domestica genome assembly, chromosome: 10.
OU745000.1:27770244-27770263
CAACCCAGAAACAATGGAGGTCCATGAATT27770244CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:26320590-26320609
CAACCCAGAAACAATGGAGGTCCATGAATT26320590CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26707185-26707204
CAACCCAGAAACACTGGAGGTCCATGAATT26707185CGGAACCACGAAAGTTTGCTATCTTCAGAAACCAGAGAAGCCCAAAATAC
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18707942-18707961
CAACCCACAAACAATGGAGGTCCATGAATT18707942CGGAACCACGAAAGTTTGCTATCTTCAGAAAGCAGAGAAGCCCAAAATAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCAAACTTTCGTGGTTCCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAAACTTTCGTGGTTCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.259 | 0.250 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAAACTTTCGTGGTTCCG&k=0&no_gap=0&offset=0&limit=50
0.366 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=CGGAACCACGAAAGTTTGCT&k=0&no_gap=0&offset=0&limit=48
0.375 | 0.010 | cgi_end;

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