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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:28:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOHET76TF BOHE Brassica oleracea genomic clone BOHET76, genomic survey sequence.
BH433445.1:161-180
ACCAACGATGTCTCCTTGAGGGCTAACAAG161AGCAACATTCTTGGACACACCGATCTGTTCTTTGGTCTGATCATCAATAG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:21208387-21208406
ACCAACGATGTCTCCTTGAGGGCTAACAAG21208387AGCAACATTCTTGGACACACCGATCTGTTCTTTGGTCTGATCATCGATAG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:30356110-30356129
ACCAACGATGTCTCCTTGAGGGCTAACAAG30356110AGCAACATTCTTGGACACACCGATCTGTTCTTTGGTCTGATCATCGATAG
Magelona johnstoni genome assembly, chromosome: 3.
OZ012686.1:19493372-19493391
CTCTGCACCAGATGAACACATTTTCATCAC19493372AGCAACATTCTTGGACACACATTATCTTGGACACCATTTATTCATATGAG
Sequence 4159 from Patent EP2519097.
JB351747.1:620-639
CTATCGATGATCAGACCAAAGAACAGATCG620GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4162 from Patent EP2519097.
JB351750.1:613-632
CTATNGATGATCAGACCAAAGAACAGATCG613GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4159 from patent US 9493785.
KH363658.1:620-639
CTATCGATGATCAGACCAAAGAACAGATCG620GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4162 from patent US 9493785.
KH363661.1:613-632
CTATNGATGATCAGACCAAAGAACAGATCG613GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4159 from Patent EP3056569.
LQ607308.1:620-639
CTATCGATGATCAGACCAAAGAACAGATCG620GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4162 from Patent EP3056569.
LQ607311.1:613-632
CTATNGATGATCAGACCAAAGAACAGATCG613GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4159 from patent US 10351873.
MO208880.1:620-639
CTATCGATGATCAGACCAAAGAACAGATCG620GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sequence 4162 from patent US 10351873.
MO208883.1:613-632
CTATNGATGATCAGACCAAAGAACAGATCG613GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Brassica oleracea var. viridis mRNA, clone: KALE-017H23, 5' end sequence.
DK462239.1:543-562
CTATCGATGATCAGACCAAAGAACAGATCG543GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
63JKCOT5_T3_028_F01_25JAN2005_005 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY022321.1:620-639
CTATCGATGATCAGACCAAAGAACAGATCG620GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
BNARO6GH_T3_020_A03_07DEC2006_031 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910527.1:599-618
CTATCGATGATCAGACCAAAGAACAGATCG599GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
BOGYD77TF BOGY Brassica oleracea genomic clone BOGYD77, genomic survey sequence.
BH422984.1:122-141
CTATTGATGATCAGACCAAAGAACAGATCG122GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Brassica oleracea var. botrytis ATP sulfurylase precursor (ASB1) mRNA, complete cds; nuclear gene for chloroplast product.
AF195511.1:539-558
CTATCGATGATCAGACCAAAGAACAGATCG539GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:20545901-20545920
CTATCGATGATCAGACCAAAGAACAGATCG20545901GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT
Sambucus nigra genome assembly, chromosome: 7.
OX422213.1:200968184-200968203
ACATCATAATTTAGCTTGGAAGCAAGCTAC200968184GTGTGTCCAAGAATGTTGCTATCGAAAAGCCTGTCTTGTGGCTTGCCCAC
Brassica oleracea ATP-sulfurylase precursor (ASBo) gene, complete cds.
U69694.1:1148-1167
CTATTGATGATCAGACCAAAGAACAGATCG1148GTGTGTCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGACATCGTTGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCAACATTCTTGGACACAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAACATTCTTGGACACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.241 | 0.232 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAACATTCTTGGACACAC&k=0&no_gap=0&offset=0&limit=50
0.784 | 0.543 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTGTCCAAGAATGTTGCT&k=0&no_gap=0&offset=0&limit=46
0.794 | 0.011 | cgi_end;

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