GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:12:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq1.
LA703859.1:2960-2979
TTCTTCTTCTTGGTCCAATTCATCATCACC2960AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq2.
LA703860.1:2401-2420
TTCTTCTTCTTGGTCCAATTCATCATCACC2401AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq3.
LA703861.1:3049-3068
TTCTTCTTCTTGGTCCAATTCATCATCACC3049AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq4.
LA703862.1:2490-2509
TTCTTCTTCTTGGTCCAATTCATCATCACC2490AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq5.
LA703863.1:3049-3068
TTCTTCTTCTTGGTCCAATTCATCATCACC3049AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq6.
LA703864.1:1840-1859
TTCTTCTTCTTGGTCCAATTCATCATCACC1840AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq7.
LA703865.1:2490-2509
TTCTTCTTCTTGGTCCAATTCATCATCACC2490AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq8.
LA703866.1:2401-2420
TTCTTCTTCTTGGTCCAATTCATCATCACC2401AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq9.
LA703867.1:2960-2979
TTCTTCTTCTTGGTCCAATTCATCATCACC2960AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp297318_c1_seq10.
LA703868.1:1840-1859
TTCTTCTTCTTGGTCCAATTCATCATCACC1840AGCAATAAACCCTCCAAGTGTTTCATCATCATCGTCGTCATCTCTGTCAA
Humulus lupulus genome assembly, chromosome: 8.
OY720655.1:9163938-9163957
TTCTTCTTCTTGGTCCAATTCATCATCACC9163938AGCAATAAACCCTCCAAGTGTTTCATCATCGTCGTCATCTCTGTCAATCT
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:900959147-900959166
CTGGACAATGCAGGAAAGGGTTTCTTCCTC900959147AGCAATAAACCCTCCAAGTGTCATGAGATACTGCAGAACATGTCCAAGAA
Anaerobacillus isosaccharinicus strain NB2006 chromosome, complete genome.
CP063356.1:4386946-4386965
AATCAATACTGTAGTAATAGCTGTTAATCC4386946AGCAATAAACCCTCCAAGTGTCCACGCTTTCAGTGTTTGGACGACAGTCA
Zeus faber genome assembly, chromosome: 10.
OY482854.1:16238283-16238302
TCTCGACAATCGTTCATCCGTTCTACTTCA16238283CACTTGGAGGGTTTATTGCTGGGGACCCAAGGGCATGCGGTGTCGAATTT
TSA: Cannabis sativa PK08128.1_1.CasaPuKu mRNA sequence.
JP449761.1:993-1012
GAGATGATGATGATGATGATGATGATGAAA993CACTTGGAGGGTTTATTGCTGGTGATGATGAATTGGACCAAGAGGAAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCAATAAACCCTCCAAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAATAAACCCTCCAAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.276 | 0.267 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAATAAACCCTCCAAGTG&k=0&no_gap=0&offset=0&limit=50
0.321 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=CACTTGGAGGGTTTATTGCT&k=0&no_gap=0&offset=0&limit=37
0.322 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).