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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 13:18:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus cDNA clone:MWL039f12_r, 5' end.
AV408360.1:281-300
GAGAAGACTGTGGGTGGGATTTTACTGCCT281AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWL046d02_r, 5' end.
AV408769.1:298-317
GAGAAGACTGTGGGTGGGATTTTACTGCCT298AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWM207g08_r, 5' end.
AV411544.1:275-294
GAGAAGACTGTGGGTGGGATTTTACTGCCT275AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWM213b01_r, 5' end.
AV411954.1:279-298
GAGAAGACTGTGGGTGGGATTTTACTGCCT279AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCT
Lotus japonicus cDNA clone:MWM218d06_r, 5' end.
AV412341.1:347-366
GAGAAGACTGTGGGTGGGATTTTACTGCCT347AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWM118b03_r, 5' end.
AV415890.1:295-314
GAGAAGACTGTGGGTGGGATTTTACTGCCT295AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWM193a03_r, 5' end.
AV421318.1:309-328
GAGAAGACTGTGGGTGGGATTTTACTGCCT309AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWM025d05_r, 5' end.
AV423285.1:373-392
GAGAAGACTGTGGGTGGGATTTTACTGCCT373AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA clone:MWM049g04_r, 5' end.
AV425161.1:348-367
GAGAAGACTGTGGGTGGGATTTTACTGCCT348AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA, clone:MFB006f02_f, 3' end.
BP034349.1:277-296
GAGAAGACTGTGGGTGGGATTTTACTGCCT277AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA, clone:SPDL001f09_f, 3' end.
BP052061.1:317-336
GAGAAGACTGTGGGTGGGATTTTACTGCCT317AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA, clone: LjFL3-011-BD06, 5'-end sequence.
FS321808.1:376-395
GAGAAGACTGTGGGTGGGATTTTACTGCCT376AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA, clone: LjFL3-050-BC12, 5'-end sequence.
FS334392.1:340-359
GAGAAGACTGTGGGTGGGATTTTACTGCCT340AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA, clone: LjFL3-064-AE09, 5'-end sequence.
FS339147.1:304-323
GAGAAGACTGTGGGTGGGATTTTACTGCCT304AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJGAH74TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO006124.1:312-331
GAGAAGACTGTGGGTGGGATTTTACTGCCT312AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTCGCTGTTGGAGA
LJGAU44TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO007502.1:330-349
GAGAAGACTGTGGGTGGGATTTTACTGCCT330AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJGAU09TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO007506.1:330-349
GAGAAGACTGTGGGTGGGATTTTACTGCCT330AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJGAB50TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO007927.1:330-349
GAGAAGACTGTGGGTGGGATTTTACTGCCT330AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJMBB37TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence.
GO020540.1:306-325
GAGAAGACTGTGGGTGGGATTTTACTGCCT306AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTACTGTTGGAGA
LJMAC50TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence.
GO020787.1:334-353
GAGAAGACTGTGGGTGGGATTTTACTGCCT334AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJMAD64TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence.
GO021087.1:303-322
GAGAAGACTGTGGGTGGGATTTTACTGCCT303AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJMBS32TFC JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence.
GO026192.1:233-252
GAGAAGACTGTGGGTGGGATTTTACTGCCT233AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
LJNBJ21TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA sequence.
GO035690.1:254-273
GAGAAGACTGTGGGTGGGATTTTACTGCCT254AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus clone JCVI-FLLj-3I1 unknown mRNA.
BT136524.1:330-349
GAGAAGACTGTGGGTGGGATTTTACTGCCT330AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus clone JCVI-FLLj-3E23 unknown mRNA.
BT137031.1:330-349
GAGAAGACTGTGGGTGGGATTTTACTGCCT330AGCACTGCTCAATCAAAGCCTCAAGGAGGTGAGGTGGTTGCTGTTGGAGA
Lotus japonicus cDNA, clone: LjFL3-050-BC12.r0, 3'-end sequence.
FS360961.1:625-644
TCTCCAACAGCAACCACCTCACCTCCTTGA625GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
LJGAB50TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO014232.1:558-577
TCTCCAACAGCAACCACCTCACCTCCTTGA558GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
LJGAH74TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO014750.1:575-594
TCTCCAACAGCGACCACCTCACCTCCTTGA575GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
LJGAU09TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO015765.1:611-630
TCTCCAACAGCAACCACCTCACCTCCTTGA611GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
LJGAU44TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO015793.1:639-658
TCTCCAACAGCAACCACCTCACCTCCTTGA639GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
LJMAC50TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA sequence.
GO027527.1:576-595
TCTCCAACAGCAACCACCTCACCTCCTTGA576GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
LJMAD64TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA sequence.
GO027623.1:497-516
TCTCCAACAGCAACCACCTCACCTCCTTGA497GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT17P02, TM0006.
AP004472.1:63411-63430
TCTCCAACAGCAACCACCTCACCTCCTTGA63411GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:70025039-70025058
TCTCCAACAGCAACCACCTCACCTCCTTGA70025039GGCTTTGATTGAGCAGTGCTAGGCAGTAAAATCCCACCCACAGTCTTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCACTGCTCAATCAAAGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCACTGCTCAATCAAAGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.150 | 1.141 | search_plus_done; http://172.18.8.135:50400/match?q=AGCACTGCTCAATCAAAGCC&k=0&no_gap=0&offset=0&limit=50
1.728 | 0.578 | search_minus_done; http://172.18.8.135:50400/match?q=GGCTTTGATTGAGCAGTGCT&k=0&no_gap=0&offset=0&limit=25
1.734 | 0.006 | cgi_end;

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