GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 20:44:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RTDR1_8_D11.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_8_D11_A015 5', mRNA sequence.
CF386168.1:61-80
GAGGACATATCCAACCATTTCAAACGAAAC61AGCAGATACGACAGTCTAACTAATTATATCACCCTGAAATAACGCATGTC
RTWW1_4_G06.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda cDNA clone RTWW1_4_G06_A015 5', mRNA sequence.
CF400327.1:83-102
GAGGACATATCCAACCATTTCAAACGAAAC83AGCAGATACGACAGTCTAACTAATTATATCACCCTGAAATAACGCATGTC
RTWW2_17_G07.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_17_G07_A021 3', mRNA sequence.
CF474174.1:267-286
GACATGCGTTATTTCAGGGTGATATAATTA267GTTAGACTGTCGTATCTGCTGTTTCGTTTGAAATGGTTGGATATGTCCTC
RTWW2_17_G07.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_17_G07_A021 5', mRNA sequence.
CF474223.1:597-616
GACATGCGTTATTTCAGGGTGATATAATTA597GTTAGACTGTCGTATCTGCTGTTTCGTTTGAAATGGTTGGATATGTCCTC
RTWW3_1_G07.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_1_G07_A022 3', mRNA sequence.
CF476419.1:391-410
TTGGGTAGTTATTTCAGGGTGATATAATTA391GTTAGACTGTCGTATCTGCTGTTTCGTTTGAAATGGTTGGATATGTCCTC
RTNACL1_4_B08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_4_B08_A029 3', mRNA sequence.
CV031836.1:161-180
TTGGGTAGTTATTTCAGGGTGATATAATTA161GTTAGACTGTCGTATCTGCTGTTTCGTTTGAAATGGTTGGATATGTCCTC
PCO011.CR_I02 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_I02 3', mRNA sequence.
GT242351.1:732-751
GACATGCGTTATTTCAGGGTGATATAATTA732GTTAGACTGTCGTATCTGCTGTTTCGTTTGAAATGGTTGGATCATGTCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCAGATACGACAGTCTAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAGATACGACAGTCTAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.143 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAGATACGACAGTCTAAC&k=0&no_gap=0&offset=0&limit=50
0.347 | 0.204 | search_minus_done; http://172.18.8.135:50400/match?q=GTTAGACTGTCGTATCTGCT&k=0&no_gap=0&offset=0&limit=48
0.350 | 0.003 | cgi_end;

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