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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 23:40:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

0158928 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV184292.1:623-642
ATGCGTATCGCCGTAAGCCAGCCCCAACAA623AGCAGCGGAGTAATAAGCGTTAACAGCCTCGCTCGTGCTCTCCTGATTCC
Raphanus sativus mRNA, clone: RSCR16J09, 5' end sequence.
FY444828.1:670-689
ATGCGTATCCCCGTAAGCCAACCCCAACAA670AGCAGCGGAGTAATAAGCGTTCACAGCCTCGCTCGTGCTCTCCTGGTTCC
TSA: Raphanus sativus RS00609 mRNA sequence.
JT785156.1:654-673
ATGCGTATCCCCGTAAGCCAACCCCAACAA654AGCAGCGGAGTAATAAGCGTTCACAGCCTCGCTCGTGCTCTCCTGGTTCC
TSA: Raphanus sativus RS00610 mRNA sequence.
JT785157.1:654-673
ATGCGTATCCCCGTAAGCCAACCCCAACAA654AGCAGCGGAGTAATAAGCGTTCACAGCCTCGCTCGTGCTCTCCTGGTTCC
TSA: Raphanus sativus RS00611 mRNA sequence.
JT785158.1:654-673
ATGCGTATCCCCGTAAGCCAACCCCAACAA654AGCAGCGGAGTAATAAGCGTTCACAGCCTCGCTCGTGCTCTCCTGGTTCC
TSA: Raphanus sativus RS00612 mRNA sequence.
JT785159.1:654-673
ATGCGTATCCCCGTAAGCCAACCCCAACAA654AGCAGCGGAGTAATAAGCGTTCACAGCCTCGCTCGTGCTCTCCTGGTTCC
TSA: Chorispora bungeana CK_43135 mRNA sequence.
KA031202.1:23-42
CGCCGTAAGCTAACCCTAACAA23AGCAGCGGAGTAATAAGCGTTCACGGCCTCTCCCGTGTTCTCCTGATTTT
TSA: Chorispora bungeana T_04605 mRNA sequence.
KA041435.1:46-65
ATCCGTGTCGCCGTAAGCTAACCCTAACAA46AGCAGCGGAGTAATAAGCGTTCACGGCCTCTCCCGTGTTCTCCTGATTTT
Brassica oleracea clone BOT01-36M16, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC240086.1:80833-80852
ATGCGTATCGCCGTAAGCCAGCCCCAACAA80833AGCAGCGGAGTAATAAGCGTTAACAGCCTCGCTCGTGCTCTCCTGATTCC
Sisymbrium irio clone SIR-39M12, complete sequence.
AC240101.1:63668-63687
ATGTGTGTCGCCGTAAGCTAACCCCAACAA63668AGCAGCGGAGTAATAAGCGTTGACGGCTTCACTCGTGCTCTCCTGATTCC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:4470930-4470949
ATGCGTATCCCCGTAAGCCAACCCCAACAA4470930AGCAGCGGAGTAATAAGCGTTCACAGCCTCGCTCGTGCTCTCCTGATTCC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:7436363-7436382
ATGCGTATCGCCGTAAGCCAGCCCCAACAA7436363AGCAGCGGAGTAATAAGCGTTAACAGCCTCGCTCGTGCTCTCCTGATTCC
Avena insularis genome assembly, chromosome: 2C.
OU342339.1:319168375-319168394
GGATCTCATGATCCAATCTTAATATAAACA319168375AGCAGCGGAGTAATAAGCGTAGTGGTGGGCTCCATCTTCAGTGTCACAGG
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:137229401-137229420
GGATCTCATGATCCAGTCTTAATACAAACA137229401AGCAGCGGAGTAATAAGCGTAGCAGTAGGCTCCATCTTCAGGGTCACAAG
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:336542165-336542184
GGATCTCATGATCCAGTCTTAATACAAACA336542165AGCAGCGGAGTAATAAGCGTAGCGGCGGGCTCCATCTTCAGTGTCACAGG
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:336603092-336603111
GGATCTCATGATCCAGTCTTAATACAAACA336603092AGCAGCGGAGTAATAAGCGTAGCGGCGGGCTCCATCTTCAGTGTCACAGG
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:480037570-480037589
GGATCTCATGATCTAGTCTTAATACAAACA480037570AGCAGCGGAGTAATAAGCGTAACGGTGGGATCCATCTTCAGTGTCATAGG
Avena insularis genome assembly, chromosome: 4C.
OU342341.1:147934274-147934293
GGATCTCATGATCCAGTCTTAGTACAAACA147934274AGCAGCGGAGTAATAAGCGTAGCGGTGGGCTCCATCTTCAGTGTCACAGG
Avena sativa genome assembly, chromosome: 2C.
OU342386.1:127991770-127991789
GGATCTCATGATCCAGTCTTAATACAAACA127991770AGCAGCGGAGTAATAAGCGTAGCGGTCTAGCCACGGGAATAGCCAGGGAT
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:288528658-288528677
ATAAGGATCTCATGATCCAGTCTTAATACA288528658AGCAGCGGAGTAATAAGCGTAGCGGTGGGGTCCATCTTCAAGGGTCACAG
Avena sativa genome assembly, chromosome: 4C.
OU342388.1:69755156-69755175
GGATCTCATGATCCAATCTTAATACAATCA69755156AGCAGCGGAGTAATAAGCGTGGTAATGGGCTCCATCTTTAGAGTCATAGG
Avena sativa genome assembly, chromosome: 4C.
OU342388.1:145762756-145762775
GGATCTCATGATCCAGTCTTAGTACAAACA145762756AGCAGCGGAGTAATAAGCGTAGTGGTGGGCTCCATCTTCAGTGTCACAGG
Avena eriantha genome assembly, chromosome: 2C.
OU342741.1:232985865-232985884
GATCTCATGATCCAGTCTTAATACAAATCA232985865AGCAGCGGAGTAATAAGCGTAGTAGTTGCCTCCATCTTCAGGGTCACATG
Avena sativa genome assembly, chromosome: 9.
OV702287.1:142098985-142099004
GGATCTCATGATCCAGTCTTAATACAAACA142098985AGCAGCGGAGTAATAAGCGTAGCGGTCTAGCCACGGGAATAGCCAGGGAT
Avena sativa genome assembly, chromosome: 11.
OV702289.1:62402319-62402338
GGATCTCATGATCCAATCTTAATACAATCA62402319AGCAGCGGAGTAATAAGCGTGGTAATGGGCTCCATCTTTAGAGTCATAGG
Avena sativa genome assembly, chromosome: 11.
OV702289.1:141948858-141948877
GGATCTCATGATCCAGTCTTAGTACAAACA141948858AGCAGCGGAGTAATAAGCGTAGTGGTGGGCTCCATCTTCAGTGTCACAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2283.
FX728492.1:1782-1801
GGAACCAGGAGAGCACGAGCGAGGCTGTGA1782ACGCTTATTACTCCGCTGCTTTGTTGGGGTTGGCTTACGGGGATACGCAT
Brassica napus putative beta-glucan elicitor receptor (Bger1), constans-like protein (CoL), and constans (Coa1) genes, complete cds.
AY280868.2:7616-7635
GGAATCAGGAGAGCACGAGCGAGGCTGTGA7616ACGCTTATTACTCCGCTGCTTTGTTGGGGTTGGCTTATGGCGATACGCAT
Brassica napus genome assembly, chromosome: A10.
HG994364.1:16303466-16303485
GGAATCAGGAGAGCACGAGCGAGGCTGTGA16303466ACGCTTATTACTCCGCTGCTTTGTTGGGGTTGGCTTACGGCGATACGCAT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:58011851-58011870
GGAATCAGGAGAGCACGAGCGAGGCTGTTA58011851ACGCTTATTACTCCGCTGCTTTGTTGGGGCTGGCTTACGGCGATACGCAT
Brassica rapa genome, scaffold: A10.
LR031577.1:13231118-13231137
GGAATCAGGAGAGCACGAGCGAGGCTGTGA13231118ACGCTTATTACTCCGCTGCTTTGTTGGGGTTGGCTTACGGCGATACGCAT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:56103779-56103798
GGAATCAGGAGAGCACGAGCGAGGCTGTTA56103779ACGCTTATTACTCCGCTGCTTTGTTGGGGCTGGCTTACGGCGATACGCAT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:15963846-15963865
GGAATCAGGAGAGCACGAGCGAGGCTGTGA15963846ACGCTTATTACTCCGCTGCTTTGTTGGGGTTGGCTTACGGCGATACGCAT
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:222455813-222455832
CTGTGACCCTTGAAGATGGACCCCACCGCT222455813ACGCTTATTACTCCGCTGCTTGTATTAAGACTGGATCATGAGATCCTTAT
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:463549207-463549226
CCTGTGACCCTGAAGATGGAGCCCCCTACC463549207ACGCTTATTACTCCGCTGCTTTATTGTATTAAGACTGGATCATGAGATCA
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:166218361-166218380
CCTGTGACACTGAAGATGGAGCCCGCTGCT166218361ACGCTTATTACTCCGCTGCTTGTTTGTATTAAGACTGGATCATGAGATCC
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:173388902-173388921
CCTGTGACCCTGAAGATGGACCCTATTGCT173388902ACGCTTATTACTCCGCTGCTTGTTTGTATTAAGACTGGATCATGAGATCC
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:383928621-383928640
CTTGTGGCCCTGAAGATGGAGCCTACTGCT383928621ACGCTTATTACTCCGCTGCTTGTTTGTATTAAGACTGGATCATGAGATCC
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:491296141-491296160
CCTGTGACCCTGAAGATGGAGCCCCCTACC491296141ACGCTTATTACTCCGCTGCTTTATTGTATTAAGACTGGATCATGAGATCA
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:64556173-64556192
GGAATCAGGAAAGCACAAGCGAGGCCGTGA64556173ACGCTTATTACTCCGCTGCTTTATTGGGGTTAGCTTACGGCGACGCACAT
Avena sativa genome assembly, chromosome: 10.
OV702288.1:176065768-176065787
CCTGTGACACTGAAGATGGAGCCCGCTGCT176065768ACGCTTATTACTCCGCTGCTTGTTTGTATTAAGACTGGATCATGAGATCC
Avena sativa genome assembly, chromosome: 10.
OV702288.1:183755338-183755357
CCTGTGACCCTGAAGATGGACCCTATTGCT183755338ACGCTTATTACTCCGCTGCTTGTTTGTATTAAGACTGGATCATGAGATCC
Avena sativa genome assembly, chromosome: 10.
OV702288.1:340900299-340900318
CTGTGACCCTTGAAGATGGACCCCACCGCT340900299ACGCTTATTACTCCGCTGCTTGTATTAAGACTGGATCATGAGATCCTTAT
Avena sativa genome assembly, chromosome: 10.
OV702288.1:433790425-433790444
CTTGTGGCCCTGAAGATGGAGCCTACTGCT433790425ACGCTTATTACTCCGCTGCTTGTTTGTATTAAGACTGGATCATGAGATCC
Avena sativa genome assembly, chromosome: 10.
OV702288.1:555047807-555047826
CCTGTGACCCTGAAGATGGAGCCCCCTACC555047807ACGCTTATTACTCCGCTGCTTTATTGTATTAAGACTGGATCATGAGATCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCAGCGGAGTAATAAGCGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAGCGGAGTAATAAGCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.419 | 0.410 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAGCGGAGTAATAAGCGT&k=0&no_gap=0&offset=0&limit=50
0.557 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=ACGCTTATTACTCCGCTGCT&k=0&no_gap=0&offset=0&limit=24
0.569 | 0.012 | cgi_end;

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