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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:34:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Sedum alfredii, clone Sa_Contig21435.
HE738540.1:353-372
CTGCTTTTCAGTGACTGTGTGAGTGAAGTG353AGCCAATCTGGACTTACCCATGATGTGATTTTGGGTTTAGAAGAAGTCTG
mth4-22E17RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR510346.1:73-92
GATGTTGTTAAGGATTTTGAAAGTGATGTG73AGCCAATCTGGACTTACCCATGAAGTGGATTTTGTTGTTTCAGGGTTTTT
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:224628076-224628095
CCTAAAGTAAGTGAACTTGTAAGTTTAGTT224628076AGCCAATCTGGACTTACCCATGATGTTGGTTTTTGTTTGTTGTTGTTGTT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:121705494-121705513
CCTAAAGTAAGTGAGCTTGTAAGTTTAGTA121705494AGCCAATCTGGACTTACCCATGATGTTGGTTTTTTGTTGCTGTTGTTGTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:229435974-229435993
CCTAAAGTAAGTGAACTTGTAAGTTTAGTT229435974AGCCAATCTGGACTTACCCATGATGTTGGTTTTTGTTTGTTGTTGTTGTT
Saururus chinensis isolate CL-2023b chromosome 3.
CP141142.1:9190414-9190433
TCAAGCTCAAACCCAGTTCATGCCAAGCTG9190414AGCCAATCTGGACTTACCCAAATTTAGGCTCAACTTGTTAATTTCACCCT
Vicia faba genome assembly, chromosome: 3.
OX451738.1:264851096-264851115
GCTGTGGTTAGAGACTTGGAGAGTGAAGTG264851096AGCCAATCTGGACTTACCCATGAACTGGTTTTGGTTGTCGTTTCTGGGGT
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:30685583-30685602
GTTATGGTTAGAGATTTTGATAGTGAAGTG30685583AGCCAATCTGGACTTACCCATGAAGTTGATTTAGTGATTTTTTCTGGGGT
Medicago lupulina genome assembly, chromosome: 3.
OY283141.1:24565045-24565064
GATGTTGTTAAGGATTTTGAAAGTGATGTG24565045AGCCAATCTGGACTTACCCATGAAGTGGATTTTGTTGTTTCTGGGTTTTT
Sequence 22 from patent US 10059974.
MI981548.1:182-201
AAAAACCCTGAAACAACAAAATCCACTTCA182TGGGTAAGTCCAGATTGGCTCACATCACTTTCAAAATCCTTAACAACATC
NF025F04ST1F1000 Developing stem Medicago truncatula cDNA clone NF025F04ST 5', mRNA sequence.
AW689942.1:182-201
AAAAACCCTGAAACAACAAAATCCACTTCA182TGGGTAAGTCCAGATTGGCTCACATCACTTTCAAAATCCTTAACAACATC
KS26061H03 KS26 Capsicum annuum cDNA, mRNA sequence.
GD135286.1:136-155
AACAACAACAACAAACAAAAACCAACATCA136TGGGTAAGTCCAGATTGGCTAACTAAACTTACAAGTTCACTTACTTTAGG
TSA: Capsicum annuum MGMT_Contig32819 mRNA sequence.
JW083063.1:98-117
AACAACAACAACAAACAAAAACCAACATCA98TGGGTAAGTCCAGATTGGCTAACTAAACTTACAAGTTCACTTACTTTAGG
TSA: Capsicum annuum CM_MegaContig_4759 mRNA sequence.
JW099646.1:131-150
AACAACAACAACAAACAAAAACCAACATCA131TGGGTAAGTCCAGATTGGCTAACTAAACTTACAAGTTCACTTACTTTAGG
TSA: Capsicum annuum EJ_MegaContig_22639, mRNA sequence.
JW133208.1:129-148
AACAACAACAACAAACAAAAACCAACATCA129TGGGTAAGTCCAGATTGGCTAACTAAACTTACAAGTTCACTTACTTTAGG
Medicago truncatula clone mth2-8n17, WORKING DRAFT SEQUENCE, 42 unordered pieces.
AC225512.14:334661-334680
AAAAACCCTGAAACAACAAAATCCACTTCA334661TGGGTAAGTCCAGATTGGCTCACATCACTTTCAAAATCCTTAACAACATC
Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:34592754-34592773
TATTACCCTTGTAGGTAAAAGCGAGGACTC34592754TGGGTAAGTCCAGATTGGCTAATGTTAAATGCTTGTGTCACCAGTGGTTT
Medicago truncatula cytochrome P450 monooxygenase CYP97C10 (CYP97C10) mRNA, complete cds.
DQ335801.1:182-201
AAAAACCCTGAAACAACAAAATCCACTTCA182TGGGTAAGTCCAGATTGGCTCACATCACTTTCAAAATCCTTAACAACATC
Medicago arabica genome assembly, chromosome: 2.
OX326965.1:39211441-39211460
AAAAACCCAGAAACAACAAAATCCACTTCA39211441TGGGTAAGTCCAGATTGGCTCACATCACTTTCAAAAACCTTAACAACATC
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:13176473-13176492
TCCCCAGAAAAAATCACAAAATCAACTTCA13176473TGGGTAAGTCCAGATTGGCTCACTTCATTATCCAAATCTCTAACCAAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCCAATCTGGACTTACCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCAATCTGGACTTACCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.196 | 0.187 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCAATCTGGACTTACCCA&k=0&no_gap=0&offset=0&limit=50
0.480 | 0.284 | search_minus_done; http://172.18.8.135:50400/match?q=TGGGTAAGTCCAGATTGGCT&k=0&no_gap=0&offset=0&limit=41
0.487 | 0.007 | cgi_end;

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