GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:14:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS07_7D10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7D10-G19-1-7.b, mRNA sequence.
CX046351.1:296-315
TAATACACGGGAACGTGCTCGTCAGCTGTT296AGCCAATGGGATTTCTGACATTCCAGAGGATATAGCTTATACTCATGTGG
CS00-C1-102-107-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672317.1:152-171
TAATACACGGGAACGTGCTCGTCAGCTGTT152AGCCAATGGGATTTCTGACATTCCAGAGGATATAGCTTATACTCATGTGG
TSA: Elaeocarpus photiniifolius mRNA, contig: Ep_rep_c542.
FX134437.1:1065-1084
TAATACACGTGAACGATCTCGGCATTTATT1065AGCCAATGGGATTTCTGACATTCCAGACGAAGCATCTTTCACCAATGTTG
Ailanthus altissima genome assembly, chromosome: 6.
OX327688.1:10590289-10590308
TAACACACGGGAACGTGCTCGTCAGCTGTT10590289AGCCAATGGGATTTCTGACATCCCAGAGGAAGCAGCTTATACTAATGTCG
Pungitius pungitius genome assembly, chromosome: 15.
OX438555.1:7618604-7618623
AATTATTTTGTACAATAATCACAAATCCGA7618604TGTCAGAAATCCCATTGGCTTTTTGTTGAGGGAAAAACGTGCAATGCATA
Swietenia macrophylla isolate HCNGB_00002344 chromosome 1.
CP135559.1:11858441-11858460
CCAAATTAGTATAAGCTGCATCCTCTGGAA11858441TGTCAGAAATCCCATTGGCTAACAGCTGACGAGCACGTTCCTGTGTACTA
Swietenia macrophylla isolate HCNGB_00002344 chromosome 28.
CP135579.1:9654180-9654199
CCAAATTAGTGTAAGCTGCATCCTCTGGAA9654180TGTCAGAAATCCCATTGGCTAACAGCTGACGAGAACGTTCCCGTGTATTA
Ailanthus altissima genome assembly, chromosome: 12.
OX327694.1:11372364-11372383
CCACATTAGTATAAGCTGCTTCCTCTGGGA11372364TGTCAGAAATCCCATTGGCTAACAGCTGACGAGCACGTTCGCGTGTATTA
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:7388560-7388579
CCACATGAGTATAAGCTATATCCTCTGGAA7388560TGTCAGAAATCCCATTGGCTAACAGCTGACGAGCACGTTCCCGTGTATTA
Pecten maximus genome assembly, chromosome: 3.
LR736840.1:5711939-5711958
TCATTATGTGGCTGATATGTAGGTATTTAC5711939TGTCAGAAATCCCATTGGCTGGCTGCCTAACAAGCTCATTCTACACCAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCCAATGGGATTTCTGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCAATGGGATTTCTGACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.211 | 0.203 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCAATGGGATTTCTGACA&k=0&no_gap=0&offset=0&limit=50
0.245 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCAGAAATCCCATTGGCT&k=0&no_gap=0&offset=0&limit=46
0.249 | 0.004 | cgi_end;

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