GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 07:32:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Eb0040K20.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0040K20 5', mRNA sequence.
CO108704.1:582-601
ACGATCTCAGCACCATTCAAACCAAAAGCT582AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTAACAGCAATCTT
GR__Eb07E18.r GR__Eb Gossypium raimondii cDNA clone GR__Eb07E18 3', mRNA sequence.
CO124395.1:630-649
ACGATCTCAGCACCATTCAAACCAAAAGCT630AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTA
GR__Eb12G18.r GR__Eb Gossypium raimondii cDNA clone GR__Eb12G18 3', mRNA sequence.
CO127705.1:582-601
ACGATCTCAGCACCATTCAAACCAAAAGCT582AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTAACAGCAATCTT
GH_TMIRS_080_G08_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW504096.1:565-584
ACGATCTCAGCACCATTCAAACCAAAAGCT565AGCCAATTCAAAGGATGGTGCCTTCCATAACATATATTAACAGCAATCTT
D03_425272.39.S1104112902.anther-SP9543 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK698478.1:726-745
ACGATCTCAGCACCATTCAAACCAAAAGCT726AGCCAATTCAAAGGATGGTGCCTTCCATAACATATATTAACAGCAATCTT
D09_432356.45.S1104152428.anther-SP15213 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK699178.1:636-655
ACGATCTCAGCACCATTCAAACCAAAAGCT636AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTAACAGCAATCTT
H10_422722.94.S1104094013.anther-SP7774 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK704205.1:586-605
ACGATCTCAGCACCATTCAAACCAAAAGCT586AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTAACAGCAATCTT
XTP072L21.R XTP Zostera marina genomic 3', genomic survey sequence.
KO006617.1:353-372
ACGATTTCAGCTCCATTCAGTCCAAAAGCT353AGCCAATTCAAAGGATGGTGTCTTCCATAACAAATGTTTACACCAATCTT
Homo sapiens chromosome 2 clone RP11-69M17, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC080186.2:20013-20032
TGACCTGACTTAGTAATGCCCTTTTTTCCT20013AGCCAATTCAAAGGATGGTGAAGGTGAAAACAACTCAGACTCCCTCAAGT
Gossypium hirsutum cultivar TM1 chromosome D12.
CP023742.1:941867-941886
ACGATCTCAGCACCATTCAAACCAAAAGCT941867AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTAACAGCAATCTT
Gossypium raimondii isolate D5-4 chromosome D5_12.
CP032564.1:55425976-55425995
ACGATCTCAGCACCATTCAAACCAAAAGCT55425976AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATATTAACAGCAATCTT
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:57599729-57599748
ACGATCTCAGCACCATTCAAACCAAAAGCT57599729AGCCAATTCAAAGGATGGTGCCTTCCGTAACATATTTTAACAGCAATCTT
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:105461972-105461991
ACGATCTCAGCACCATTCAAACCAAAAGCT105461972AGCCAATTCAAAGGATGGTGCCTTCCATAACATATATTAACAGCAATCTT
Polygonum aviculare genome assembly, chromosome: 8.
OW204030.1:7257952-7257971
ACAATCTCAGCACCGTTCAAGCCAAAAGCC7257952AGCCAATTCAAAGGATGGTGCCTCCCGTAGCATATGTTGACAGCAATCTT
Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:101082206-101082225
ACAATCTCAGCACCATTCAAACCAAAAGCT101082206AGCCAATTCAAAGGATGGTGTCTTCCATAACAAATATTAACAGCAATCTT
Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:8885315-8885334
ACAATCTCAGCACCATTCAAACCAAAAGCT8885315AGCCAATTCAAAGGATGGTGTCTTCCATAACAAATATTAACAGCAATCTT
Persicaria maculosa genome assembly, chromosome: 20.
OY998270.1:50797331-50797350
ACGATCTCAGCACCATTCAAGCCAAAACCG50797331AGCCAATTCAAAGGATGGTGCCTCCCGTAGCATATGTTGACAGCGATCTT
Polygonum maritimum genome assembly, chromosome: 8.
OZ002735.1:34251086-34251105
ACAATTTCAGCACCATTCAAGCCAAAAGCC34251086AGCCAATTCAAAGGATGGTGCCTCCCATAGCATATGTTGACAACAATCTT
Polygonum maritimum genome assembly, chromosome: 10.
OZ002737.1:29342947-29342966
ACAATTTCAGCACCGTTCAAGCCAAAATCC29342947AGCCAATTCAAAGGATGGTGCCTCCCATAGCATATGTTGACAACAATCTT
Phalera bucephala genome assembly, chromosome: Z.
LR990609.1:42376197-42376216
ACTATTTCAGCACCATTGATACCAAACATA42376197AGCCAATTCAAAGGATGGTGGCGACCATAACAAATATTGATGGCGATTTT
Homo sapiens BAC clone RP11-681E16 from 2, complete sequence.
AC019140.5:70738-70757
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT70738CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:161791647-161791666
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT161791647CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:166062013-166062032
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT166062013CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:165482425-165482444
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT165482425CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:165245884-165245903
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT165245884CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Sequence 2952 from patent US 9890389.
MI431604.1:906-925
AAGATTGCTGTTAATATATGTTACGGAAGG906CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Sequence 2955 from patent US 9890389.
MI431607.1:872-891
AAGATTGCTGTTAATATATGTTATGGAAGG872CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Sequence 2952 from patent US 10597672.
MO986526.1:906-925
AAGATTGCTGTTAATATATGTTACGGAAGG906CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Sequence 2955 from patent US 10597672.
MO986529.1:872-891
AAGATTGCTGTTAATATATGTTATGGAAGG872CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Sequence 24635 from patent US 11001841.
MX763140.1:582-601
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT582CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Sequence 2952 from patent US 11352636.
OO263243.1:906-925
AAGATTGCTGTTAATATATGTTACGGAAGG906CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Sequence 2955 from patent US 11352636.
OO263246.1:872-891
AAGATTGCTGTTAATATATGTTATGGAAGG872CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Eukaryotic synthetic construct chromosome 2.
CP034498.1:166451252-166451271
ACTTGAGGGAGTCTAAGTTGTTTTCACCTT166451252CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
Eukaryotic synthetic construct chromosome 2.
CP034523.1:166451252-166451271
ACTTGAGGGAGTCTGAGTTGTTTTCACCTT166451252CACCATCCTTTGAATTGGCTAGGAAAAAAGGGCATTACTAAGTCAGGTCA
BNLGHi6341 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (U23139) highly similar to beta-ureidopropionase (SP:BUP_RAT) [Caenorhabditis elegans], mRNA sequence.
AI730169.1:199-218
AAGATTGCTGTTAATATATGTTACGGAAGG199CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GA__Ed0015D02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0015D02f, mRNA sequence.
BQ409076.1:473-492
AAGATTGCTGTTAATATATGTTATGGAAGG473CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGANATCGT
GR__Ea47L24.r GR__Ea Gossypium raimondii cDNA clone GR__Ea47L24 3', mRNA sequence.
CO082915.1:510-529
AAGATTGCTGTTAATATATGTTACGGAAGG510CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GR__Ea09K12.f GR__Ea Gossypium raimondii cDNA clone GR__Ea09K12 5', mRNA sequence.
CO089937.1:703-722
AAGATTGCTGTTAATATATGTTACGGAAGG703CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GR__Ea09P17.f GR__Ea Gossypium raimondii cDNA clone GR__Ea09P17 5', mRNA sequence.
CO090154.1:228-247
AAGATTGCTGTTAATATATGTTACGGAAGG228CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GR__Ea12K18.f GR__Ea Gossypium raimondii cDNA clone GR__Ea12K18 5', mRNA sequence.
CO091925.1:789-808
AAGATTGCTGTTAATATATGTTACGGAAGG789CACCATCCTTTGAATTGGCTACCTTTTGGTTTGAA
GR__Ea24D08.r GR__Ea Gossypium raimondii cDNA clone GR__Ea24D08 3', mRNA sequence.
CO099355.1:751-770
AAGATTGCTGTTAATATATGTTACGGAAGG751CACCATCCTTTGAATTGGCTAGCT
GR__Eb0029N14.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0029N14 3', mRNA sequence.
CO102418.1:777-796
AAGATTGCTGTTAATATATGTTACGGAAGG777CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GR__Eb06E11.f GR__Eb Gossypium raimondii cDNA clone GR__Eb06E11 5', mRNA sequence.
CO123823.1:795-814
AAGATTGCTGTTAATATATGTTACGGAAGG795CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAA
GR__Eb07E18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb07E18 5', mRNA sequence.
CO124394.1:695-714
AAGATTGCTGTTAATATATGTTACGGAAGG695CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GR__Eb07I16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb07I16 5', mRNA sequence.
CO124555.1:695-714
AAGATTGCTGTTAATATATGTTACGGAAGG695CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GH_TMIRS_080_G08_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW504095.1:128-147
AAGATTGCTGTTAATATATGTTATGGAAGG128CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
GH_TMIRS_149_G02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511071.1:63-82
AAGATTGCTGTTAATATATGTTACGGAAGG63CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
UFL_237_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES809029.1:311-330
AAGATTGCTGTTAATATATGTTATGGAAGG311CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
UFL_167_H7 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY197185.1:237-256
AAGATTGCTGTTAATATATGTTATGGAAGG237CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
EST003762 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 15-E10 5', mRNA sequence.
GR710562.1:281-300
AAGATTGCTGTTAATATATGTTACGGAAGG281CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
EST004345 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 17-E16 5', mRNA sequence.
GR711145.1:799-818
AAGATTGCTGTTAATATATGTTACGGAAGG799CACCATCCTTTGAATTGGCTAGCTTT
7124_EST002817 7124 root normalized cDNA library Gossypium barbadense cDNA clone 17H-23 5', mRNA sequence.
GR926629.1:119-138
AAGATTGCTGTTAATATATGTTACGGAAGG119CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
B02-GC4151 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801598.1:266-285
AAGATTGCTGTTAATATATGTTACGGAAGG266CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
TSA: Pandanus boninensis mRNA, contig: Pb_c12150.
FX173900.1:64-83
AAGATTGGTATAAATATCTGTTATGGAAGG64CACCATCCTTTGAATTGGCTAGCATTTGGACTGAATGGAGCTGAGATCGT
Gossypium hirsutum cultivar TM1 chromosome A12.
CP023745.1:606882-606901
AAGATTGCTGTTAATATATGTTATGGAAGG606882CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Gossypioides kirkii chromosome KI_12.
CP032254.1:11996950-11996969
AAGATTGCTGTTAATATATGTTACGGAAGG11996950CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:3097962-3097981
AAGATTGCTGTTAATATATGTTACGGAAGG3097962CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Gossypium turneri isolate D10-2 chromosome D10_12.
CP032582.1:1708518-1708537
AAGATTGCTGTTAATATATGTTACGGAAGG1708518CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Cicer arietinum chromosome Ca1.
CP039331.1:47877885-47877904
AGGTGTTGAGAGGGTGTGAGATGGTAATCC47877885CACCATCCTTTGAATTGGCTTGAGAATCCTGCTATTAGTAGTTCAGCTAT
Cicer arietinum chromosome Ca1.
CP040766.1:47877795-47877814
AGGTGTTGAGAGGGTGTGAGATGGTAATCC47877795CACCATCCTTTGAATTGGCTTGAGAATCCTGCTATTAGTAGTTCAGCTAT
Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:3279212-3279231
AAGATTGCTGTTAATATATGTTATGGAAGG3279212CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:2055534-2055553
AAGATTGCTGTTAATATATGTTATGGAAGG2055534CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:2542103-2542122
AAGATTGCTGTTAATATATGTTACGGAAGG2542103CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:2000826-2000845
AAGATTGCTGTTAATATATGTTACGGAAGG2000826CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCTGAGATCGT
Theobroma grandiflorum isolate C1074 chromosome 2.
CP142127.1:44983884-44983903
AAGATTGCTGTTAATATATGTTATGGAAGG44983884CACCATCCTTTGAATTGGCTAGCTTTTGGTTTGAATGGTGCAGAGATTGT
Persicaria maculosa genome assembly, chromosome: 1.
OY998251.1:10497864-10497883
AAGATCGCTGTCAACATATGCTACGGGAGG10497864CACCATCCTTTGAATTGGCTAGGTTTTGGCTTGAATGGCGCTGAGATCGT
Polygonum maritimum genome assembly, chromosome: 2.
OZ002729.1:31417695-31417714
AAGGTTGCGTTTAACATATGCTACAGAAGG31417695CACCATCCTTTGAATTGGCTGGCTTTTGGCTTGAATGGTGCTGAGATTGT
Polygonum maritimum genome assembly, chromosome: 3.
OZ002730.1:39798039-39798058
AAGATTGCTGTCAACATATGCTACGGGAGG39798039CACCATCCTTTGAATTGGCTGGCTTTTGGCTTGAACGGTGCTGAGATTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCCAATTCAAAGGATGGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCAATTCAAAGGATGGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.919 | 0.910 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCAATTCAAAGGATGGTG&k=0&no_gap=0&offset=0&limit=50
2.761 | 1.843 | search_minus_done; http://172.18.8.135:50400/match?q=CACCATCCTTTGAATTGGCT&k=0&no_gap=0&offset=0&limit=30
2.792 | 0.031 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).