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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 19:56:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium raimondii isolate D5-4 chromosome D5_04.
CP032556.1:4571297-4571316
TTGGAAGGAAGAATAAGGCCTCCATGTTTT4571297AGCCACCGATCTCTAGCAGTAATAACACTTCCCAACATACTCTAGAAAAT
Gossypium herbaceum isolate GPA1alz chromosome 4.
CP106703.1:5883835-5883854
TTGGAAGGAAGAATAAGGCCTCCATGTTTT5883835AGCCACCGATCTCTAGCAGTAATAACACTTCCCAACATACTCTGGAAAAT
Theobroma cacao isolate Sca6 chromosome 2.
CP139292.1:8893636-8893655
ATGGAAGGAAGAATAAGACCTCCACGTTTT8893636AGCCACCGATCTCTAGCAGTAATAACACTCCCCAGCATACTCTGGAAAAT
Theobroma cacao genome assembly, chromosome: II.
LT594789.1:8147127-8147146
ATGGAAGGAAGAATAAGACCTCCACGTTTT8147127AGCCACCGATCTCTAGCAGTAATAACACTCCCCAGCATACTCTGGAAAAT
Theobroma cacao genome assembly, chromosome: 2.
OY284449.1:8551447-8551466
ATGGAAGGAAGAATAAGACCTCCACGTTTT8551447AGCCACCGATCTCTAGCAGTAATAACACTCCCCAGCATACTCTGGAAAAT
Hibiscus tridactylites genome assembly, chromosome: 19.
OY288283.1:50141050-50141069
TTGGAAGGAAGAATAAGGCCTCCAGGTTTT50141050AGCCACCGATCTCTAGCAGTAATAACACTTCCCAGCATACTCTGGGAAAA
GR__Ea43J11.r GR__Ea Gossypium raimondii cDNA clone GR__Ea43J11 3', mRNA sequence.
CO080246.1:64-83
CTGTATGAGAGTATGTTGGGAAGTGTTATT64ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
GR__Eb04K16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb04K16 5', mRNA sequence.
CO122835.1:331-350
CTGTATGAGAGTATGTTGGGAAGTGTTATT331ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
EST1057666 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547026.1:713-732
CTGTATGAGAGTATGTTGGGAAGTGTTATT713ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATT
EST1059914 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT549274.1:652-671
CTGTATGAGAGTATGTTGGGAAGTGTTATT652ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
EST1062126 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT551486.1:719-738
CTGTATGAGAGTATGTTGGGAAGTGTTATT719ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
EST1068535 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT557895.1:765-784
CTGTATGAGAGTATGTTGGGAAGTGTTATT765ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
EST1082182 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT571542.1:713-732
CTGTATGAGAGTATGTTGGGAAGTGTTATT713ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
UFL_129_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES846111.1:452-471
CTGTATGAGAGTATGTTGGGAAGTGTTATT452ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
mhczaa0_020611.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_020611.z1, mRNA sequence.
JG858256.1:398-417
CTGTATGAGAGTATGTTGGGAAGTGTTATT398ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
E05-105A06 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797121.1:225-244
ATTTTCCAGAGTATGTTGGGAAGTGTTATT225ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
A06-105A06 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797407.1:229-248
ATTTTCCAGAGTATGTTGGGAAGTGTTATT229ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Gossypium turneri isolate D10-2 chromosome D10_04.
CP032574.1:47872472-47872491
ATTTTCTAGAGTATGTTGGGAAGTGTTATT47872472ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Gossypium herbaceum isolate Zhongcao1 chromosome 4.
CP106690.1:108086262-108086281
ATTTTCCAGAGTATGTTGGGAAGTGTTATT108086262ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Gossypium bickii isolate GPG1lz chromosome 4.
CP106717.1:111201600-111201619
ATTTTCCAGAGTATGTTGGGAAGTGTTATT111201600ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Gossypium rotundifolium isolate GPK201 chromosome 4.
CP106725.1:170389112-170389131
ATTTTCCAGAGTATGTTGGGAAGTGTTATT170389112ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Theobroma grandiflorum isolate C1074 chromosome 2.
CP142127.1:43218463-43218482
ATTTTCCAGAGTATGCTGGGGAGTGTTATT43218463ACTGCTAGAGATCGGTGGCTAAAACGTGGAGGTCTTATTCTTCCTTCCAT
Gossypium raimondii protein arginine methyltransferase 6 mRNA, partial cds.
KM399887.1:391-410
CTGTATGAGAGTATGTTGGGAAGTGTTATT391ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Mercurialis annua genome assembly, chromosome: LG5.
OW569314.1:6489659-6489678
GTATTGTAGAGCATGCTCGGGAGTGTTATT6489659ACTGCTAGAGATCGGTGGCTGAAACGTGGAGGAATTATTCTGCCATCAAC
Theobroma cacao genome assembly, chromosome: 2.
OY284439.1:35337096-35337115
ATTTTCCAGAGTATGCTGGGGAGTGTTATT35337096ACTGCTAGAGATCGGTGGCTAAAACGTGGAGGTCTTATTCTTCCTTCCAT
Theobroma cacao genome assembly, chromosome: 2.
OY284459.1:35252753-35252772
ATTTTCCAGAGTATGCTGGGGAGTGTTATT35252753ACTGCTAGAGATCGGTGGCTAAAACGTGGAGGTCTTATTCTTCCTTCCAT
Hibiscus tridactylites genome assembly, chromosome: 3.
OY288267.1:39438983-39439002
ATTTTCCAGAGTATGCTGGGAAGTGTTATT39438983ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Hibiscus tridactylites genome assembly, chromosome: 7.
OY288271.1:40850305-40850324
ATTTTCCAGAGTATGCTGGGAAGTGTTATT40850305ACTGCTAGAGATCGGTGGCTAAAACATGGAGGCCTTATTCTTCCTTCCAA
Hibiscus tridactylites genome assembly, chromosome: 17.
OY288281.1:48639929-48639948
TTTTCCCAGAGTATGCTGGGAAGTGTTATT48639929ACTGCTAGAGATCGGTGGCTAAAACCTGGAGGCCTTATTCTTCCTTCCAA

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