GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:43:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
AC189225.2:71146-71165
AGCCAGTTTGCAAACATCTTAGTTCATTGT71146AGCCACCGGTTAATTAGGCTAAACATGTACATAGCTCATAAGCTCATAGC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:6093980-6093999
AGCCGGTTTGCAAACATCTTAGTTCATTGT6093980AGCCACCGGTTAATTAGGCTAAACATGTACATAGCTCATAAGCTCATAGC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:5486122-5486141
AGCCAGTTTGCAAACATCTTAGTTCATTGT5486122AGCCACCGGTTAATTAGGCTAAACATGTACATAGCTCATAAGCTCATAGC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:7208518-7208537
AGCCGGTTCGCAAACATCTTAGTTTATTGT7208518AGCCACCGGTTAATTAGGCTAAACATGTACAGAGCTCATAAGCTCATAGC
Brassica rapa genome, scaffold: A09.
LR031568.1:5606429-5606448
AGCCAGTTTGCAAACATCTTAGTTCATTGT5606429AGCCACCGGTTAATTAGGCTAAACATGTACATAGCTCATAAGCTCATAGC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:5808786-5808805
AGCCAGTTTGCAAACATCTTAGTTCATTGT5808786AGCCACCGGTTAATTAGGCTAAACATGTACATAGCTCATAAGCTCATAGC
Brassica oleracea var. viridis mRNA, clone: KALE-044K18, 5' end sequence.
DK472617.1:206-225
GCTATGAGCTTATGAGCTCTGTACATGTTT206AGCCTAATTAACCGGTGGCTACAATAAACTAAGATGTTTGCGAAAAAAAA
Brassica napus 33 kDa oxygen evolving protein of photosystem II (psbo) mRNA, complete cds.
AF139818.1:1185-1204
GCTATGAGCTTATGAGCTCTGTACATGTTT1185AGCCTAATTAACCGGTGGCTACAATAAACTAAGATGTTTGCGAAAAAAAA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61914836-61914855
GCTATGAGCTTATGAGCTCTGTACATGTTT61914836AGCCTAATTAACCGGTGGCTACAATAAACTAAGATGTTTGCGAACCGGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCCACCGGTTAATTAGGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCACCGGTTAATTAGGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCACCGGTTAATTAGGCT&k=0&no_gap=0&offset=0&limit=50
0.227 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=AGCCTAATTAACCGGTGGCT&k=0&no_gap=0&offset=0&limit=44
0.229 | 0.002 | cgi_end;

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