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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:40:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Daucus carota subsp. sativus cultivar DH1 chromosome 5.
CP093347.1:47077130-47077150
GAGTGGAGGATAAGGCCAACAGTGTCGTCA47077130AGCCATTGATAGTCGCTGAAGGCATGATGGCCACATTCATGGGCTATGACC
Daucus carota isolate Kuroda chromosome 5.
CP125305.1:45519122-45519142
GAGTGGAGGATAAGGCCAACAGTGTCGTCA45519122AGCCATTGATAGTCGCTGAAGGCATGATGGCCACATTCATGGGCTATGACC
AGN_RPC006xk07f1.ab1 AGN_RPC Nicotiana tabacum cDNA 5', mRNA sequence.
FG147150.1:433-453
GGTCATTGCCCATGAATGTGGTCACCATGC433CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
AGN_RNC116xc13f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence.
FG148776.1:473-493
GGTCATTGCCCATGAATGTGGTCACCATGC473CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
AGN_PNL218af1_c10.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG191642.1:469-489
GGTCATTGCCCATGAATGTGGTCACCATGC469CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
AGN_PNL231cf1_f1.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG201504.1:415-435
GGTCATTGCCCATGAATGTGGTCACCATGC415CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
Nicotiana tabacum cDNA, clone: TBK01A01NGRL0016_2_B05, 5'-end sequence.
FS378378.1:440-460
GGTCATTGCCCATGAATGTGGTCACCATGC440CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
Nicotiana tabacum cDNA, clone: TBK01A01NGRL0017_2_A10, 5'-end sequence.
FS378715.1:460-480
GGTCATTGCCCATGAATGTGGTCACCATGC460CTTCAGCGACTATCAATGGCTTGATGATACTGTTGG
NSYL369 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ957625.1:449-469
GGTCATTGCCCATGAATGTGGTCACCATGC449CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
TSA: Psychotria gabriellae, clone contig_22309.
HE843530.1:78-98
GGTCATTGCCCACGAATGCGGCCACCATGC78CTTCAGCGACTATCAATGGCTTGATGACACTGTTGGCCTCATCCTGCATTC
CHO_OF3337xb02f1.ab1 CHO_OF3 Nicotiana tabacum genomic 5', genomic survey sequence.
FH216607.1:54-74
GGTCATTGCCCATGAATGTGGTCACCATGC54CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCCATTGATAGTCGCTGAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCATTGATAGTCGCTGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCATTGATAGTCGCTGAAG&k=0&no_gap=0&offset=0&limit=50
0.673 | 0.574 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCAGCGACTATCAATGGCT&k=0&no_gap=0&offset=0&limit=48
0.679 | 0.006 | cgi_end;

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