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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1BA62JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW721163.1:522-541
CAAGCTACTTAGCTCTATGGCCATATCAAC522AGCCGCTATAAGCAAGAGCAAGATTTATGCTTGGTTAGAAGAAGAAAGGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_28414.
FX667164.1:487-506
CAAGCTACTTAGCTCTATGGCCATATCAAC487AGCCGCTATAAGCAAGAGCAAGATTTATGCTTGTTTAGAAGAAGAAAGGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_56651.
FX792917.1:474-493
CAAGCTACTTAGCTCTATGGCCATATCAAC474AGCCGCTATAAGCAAGAGCAAGATTTATGCTTGTTTAGAAGAAGAAAGGC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:17392968-17392987
CAAGCTACTTAGCTCTATGGCCATATCAAC17392968AGCCGCTATAAGCAAGAGCAAGATTTATGCTTGTTTAGAAGAAGAAAGGC
Sacculina carcini genome assembly, chromosome: 1.
OU696570.1:13512506-13512525
GGCACCGTCTAATTGAACGACACAAAGCAA13512506AGCCGCTATAAGCAAGAGCAAAAGCAAGAGCAAGCCATAAGCAGAGCCGT
RS1BA62TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW716841.1:377-396
GCCTTTCTTCTTCTAAACAAGCATAAATCT377TGCTCTTGCTTATAGCGGCTGTTGATATGGCCATAGAGCTAAGTAGCTTG
RS2E711TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940462.1:370-389
GCCTTTCTTCTTCTAAACAAGCATAAATCT370TGCTCTTGCTTATAGCGGCTGTTGATATGGCCATAGAGCTAAGTAGCTTG
Raphanus sativus mRNA, clone: RSCS03L04, 5' end sequence.
FY447126.1:355-374
GCCTTTCTTCTTCTAAACAAGCATAAATCT355TGCTCTTGCTTATAGCGGCTGTTGATATGGCCATAGAGCTAAGTAGCTTG
TSA: Raphanus sativus RS26722 mRNA sequence.
JT811269.1:219-238
GCCTTTCTTCTTCTAAACAAGCATAAATCT219TGCTCTTGCTTATAGCGGCTGTTGATATGGCCATAGAGCTAAGTAGCTTG
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:15586414-15586433
GCCTTTCTTCTTCTAAACAAGCATAAATCT15586414TGCTCTTGCTTATAGCGGCTGTTGATATGGCCATAGAGCTAAGTAGCTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCCGCTATAAGCAAGAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCGCTATAAGCAAGAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.296 | 0.287 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCGCTATAAGCAAGAGCA&k=0&no_gap=0&offset=0&limit=50
0.803 | 0.507 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCTTGCTTATAGCGGCT&k=0&no_gap=0&offset=0&limit=45
0.806 | 0.004 | cgi_end;

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