GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 04:59:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chelon labrosus genome assembly, chromosome: 3.
OY741291.1:2211209-2211228
TCGTCCTCCAGAGTCTGAACTTCTGAAATG2211209AGCCTGTGCAGTCCAAAACTACAGAGTATGCAAGTTTGCATCCGTAGTCA
Musa acuminata subsp. malaccensis isolate AA chromosome 9.
CP126378.1:42523072-42523091
CTTGTGAATCCATGGTAGAAGAAGGAAGCC42523072AGCCTGTGCAGTCCAAAACTATACACAGCCTTCCCTTATAAAAAGCTCTC
Musa acuminata subsp. malaccensis isolate AA chromosome 20.
CP126389.1:42517028-42517047
CTTGTGAATCCATGGTAGAAGAAGGAAGCC42517028AGCCTGTGCAGTCCAAAACTATACACAGCCTTCCCTTATAAAAAGCTCTC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A09.
HG996474.1:42914177-42914196
CTTGTGAATCCATGGCAGAAGAAGGAAGCC42914177AGCCTGTGCAGTCCAAAACTATATACAGCCTTCCCTTATAAAAAGTTCTC
Musa schizocarpa genome assembly, chromosome: S09.
LS990923.1:48314014-48314033
CTTGTGAATCAATGGCAGAAGAAGGAAGCC48314014AGCCTGTGCAGTCCAAAACTATACACAGCCTTCCCTTATAAAAAGCTCTC
Tridacna gigas genome assembly, chromosome: 1.
OX244028.2:111301086-111301105
AATGCATCCGCGAAAAGTATCGACCAGCTC111301086AGCCTGTGCAGTCCAAAACTTTTTGCTATCGGTCAATTTTCTGCATGTCA
Tridacna gigas genome assembly, chromosome: 6.
OX244033.2:12170567-12170586
TTGCATCTGCGAAAAGTATCGACTCAGGTC12170567AGCCTGTGCAGTCCAAAACTTTTCGCTGTAAGTCAGTTAACCACCATTTT
Tridacna gigas genome assembly, chromosome: 13.
OX244040.2:4415646-4415665
CTTTTCGCTACTGGTCAGTTTTTTCAGGTC4415646AGCCTGTGCAGTCCAAAACTTTTCGCTATTGGTCAATTTTCTATACATCC
Hippopus hippopus genome assembly, chromosome: 9.
OX328104.1:29569935-29569954
ATGCATCTGCATACAGTATTGACCCAGGTT29569935AGCCTGTGCAGTCCAAAACTTTTTCAGAATTGGTAAATTTTCTGCATGTC
Tridacna derasa genome assembly, chromosome: 10.
OY723423.1:26901810-26901829
ATGCATCTGCATACAGTATTGACCCAGGTT26901810AGCCTGTGCAGTCCAAAACTTTTTCACTATTGGTAAATTTTCTGCATGTC
Tridacna derasa genome assembly, chromosome: 15.
OY723428.1:26912197-26912216
ATACATCTACAAAAAATATCGACCTAGGTC26912197AGCCTGTGCAGTCCAAAACTTTTTGCTATTGGTCAACTTTCTGCATGTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCCTGTGCAGTCCAAAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCTGTGCAGTCCAAAACT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCTGTGCAGTCCAAAACT&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTTTGGACTGCACAGGCT&k=0&no_gap=0&offset=0&limit=39
0.152 | 0.000 | cgi_end;

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