GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 00:42:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034I14, complete sequence.
AC189311.2:65042-65061
AAGTGGGAAAAGGAGATTCCTTGTTCCCCA65042AGCCTTGTTGCTTTTCAACGTCACACTCTATAACTGTATTCACCTTAAAA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3929891-3929910
AAGTGGGAAAAGGAGATTCCTTGTTCTCCA3929891AGCCTTGTTGCTTTTCAACGTCACAGTCTATAACTGTATTCACCTTAAAA
Brassica nigra clone CGN06634-B3 microsatellite sequence.
DQ327820.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTATAACTGTATTCACCTTAAAACC
Brassica nigra clone CGN06634-B1 microsatellite sequence.
DQ327821.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTATAACTGTATTCACTTTAAAACC
Brassica carinata clone CGN03950-B2 microsatellite sequence.
DQ327822.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTATAACTGTATTCACCTTAAAACC
Brassica juncea clone 4594-B2 microsatellite sequence.
DQ327823.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTATAACTGTATTCACCTTAAAACC
Brassica juncea clone CGN07154-B1 microsatellite sequence.
DQ327824.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTATAACTGTATTCACTTTAAAACC
Brassica carinata clone CGN03950-B1 microsatellite sequence.
DQ327825.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTATAACTGTATTCACCTYAAAACC
Brassica rapa clone Pachuca-A3 microsatellite sequence.
DQ327826.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTCTATAACTGTATTCACCTTAAAA
Brassica rapa clone Pachuca-A2 microsatellite sequence.
DQ327827.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTCTATAACTGTATTCACCTTAAAA
Brassica juncea clone CGN07154-A2 microsatellite sequence.
DQ327829.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTCTATAACTGTATTCACCTTAAAA
Brassica napus clone Vikros-A2 microsatellite sequence.
DQ327830.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTCTATAACTGTATTCACCTTAAAA
Brassica oleracea var. capitata clone Ruhm von Enkhuiser-C microsatellite sequence.
DQ327831.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTGTATTCACCTTAAAACCGCCATT
Brassica napus clone Vikros-C microsatellite sequence.
DQ327832.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTGTATTCACCTTAATACCGCCATT
Brassica carinata clone CGN03950-C microsatellite sequence.
DQ327833.1:1-20
1AGCCTTGTTGCTTTTCAACGTCACACTGTATTCACCTTAAAACCGCCATT
Boloria selene genome assembly, chromosome: 21.
HG993153.1:10040640-10040659
ATATTTGTACTATCTGGTATCCATACAACA10040640AGCCTTGTTGCTTTTCAACGTAACTAGATGGTGCTGTGTGTTAAATGTTA
odf79f04.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH976318.1:55-74
GGAATTCGTTTTAAGGTGAATACAGTGTGA55CGTTGAAAAGCAACAAGGCTTGGAGAACAAGGAAACTACTTTTTCCCACT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:1176098-1176117
TTTTAAGGTGAATACAGTTATAGAGTGTGA1176098CGTTGAAAAGCAACAAGGCTTGGGGAACAAGGAATCTCCTTTTCCCACTT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:50715719-50715738
AATGGCGGTTTTAAGGTGAATACAGTGTGA50715719CGTTGAAAAGCAACAAGGCTTGGAGAACAAGCAAACTCCTTTTTCCCACT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:25454847-25454866
TTTTAAGGTGAATACAGTTATAGACTGTGA25454847CGTTGAAAAGCAACAAGGCTTGGAGAACAAGGAATCTCCTTTTCCCACTT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:44598098-44598117
AATGGCGGTTTTAAGGTGAATACAGTGTGA44598098CGTTGAAAAGCAACAAGGCTTGGAGAACAAGCAAACTCCTTTTTCCCACT
Brassica rapa genome, scaffold: A07.
LR031574.1:24368185-24368204
TTTTAAGGTGAATACAGTTATAGAGTGTGA24368185CGTTGAAAAGCAACAAGGCTTGGGGAACAAGGAATCTCCTTTTCCCACTT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:41100582-41100601
AATGGCGGTTTTAAGGTGAATACAGTGTGA41100582CGTTGAAAAGCAACAAGGCTTGGAGAACAAGGAAACTACTTTTTCCCACT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:24706428-24706447
TTTTAAGGTGAATACAGTTATAGAGTGTGA24706428CGTTGAAAAGCAACAAGGCTTGGGGAACAAGGAATCTCCTTTTCCCACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCCTTGTTGCTTTTCAACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCTTGTTGCTTTTCAACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.341 | 0.332 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCTTGTTGCTTTTCAACG&k=0&no_gap=0&offset=0&limit=50
0.496 | 0.155 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTGAAAAGCAACAAGGCT&k=0&no_gap=0&offset=0&limit=34
0.502 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).