GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:38:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 5 from Patent WO2014080034.
JC528715.1:1-20
1AGCGGGAAATGAAAAGGTAT
Phoenix dactylifera microsatellite DNA, clone CIR016.
AJ571675.1:34-53
GAGGGGTAAAATCCGATAACCCGATCGCCC34AGCGGGAAATGAAAAGGTATTGGAGGGAGAGAGAGAGAGAGAGAGAGAGA
Andrena dorsata genome assembly, chromosome: 3.
OV815489.1:28834690-28834709
TGAATAGGAGAAGTGGAAGGCACCGGGGAA28834690AGCGGGAAATGAAAAGGTATTTCAACGTCAGGAGGTACATAGGTACGGTA
Andrena hattorfiana genome assembly, chromosome: 7.
OX122895.1:30456682-30456701
GTGAATAGGAGAAAAGAAGGCACGAGGGAA30456682AGCGGGAAATGAAAAGGTATTTCAACGTCAAAAGGTACATAGGTACGGGA
Andrena fulva genome assembly, chromosome: 1.
OX276327.1:85045588-85045607
GTGAATAGGAGAAAAGAAGGCTCGGGGGAA85045588AGCGGGAAATGAAAAGGTATTTCAACGTCAGGAGGTACATAGGTACCTAC
Andrena bucephala genome assembly, chromosome: 1.
OX387715.1:116866114-116866133
GTGAATAGGAGAAAAGAAGGCACGGGGGAA116866114AGCGGGAAATGAAAAGGTATTTCAACGTCAGGCGGTACATAGGTACGGGA
Protula sp. h YS-2021 genome assembly, chromosome: 2.
OX457025.1:24357192-24357211
TTATAAATCCAGACGACTGGGGGTTAATTG24357192AGCGGGAAATGAAAAGGTATGAAGCACAAGGCAAAGACTCGGAGAAAGAG
Andrena carantonica genome assembly, chromosome: 1.
OX731548.1:100577893-100577912
GTGAATAGGAGAAAAGAAGGCACGGGGGAA100577893AGCGGGAAATGAAAAGGTATTTCAACGTCAGGCGGTACACAGGTACGGGA
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:147443686-147443705
CGGAGATCTTCCTTTTAGTTTTGATTAATG147443686AGCGGGAAATGAAAAGGTATTTTACTAGTATGGCTATCATTCAAGAGAAA
Caenorhabditis uteleia genome assembly, chromosome: X.
OY752138.1:18404847-18404866
AATCCAATTAGTGAATGTGGTGATTGGCGA18404847AGCGGGAAATGAAAAGGTATGTAACATACATAGAGAAAAAAGAACAACAA
Andrena praecox genome assembly, chromosome: 1.
OZ010728.1:94813106-94813125
GTGAATAGGAGGAAAGAAGGCACGGGGGAA94813106AGCGGGAAATGAAAAGGTATTTCAACGTCAGGAGGTACATAGGTACCTAC
Andrena camellia isolate ACW chromosome 6.
CP118763.1:10864555-10864574
GTGATCACGGGCTAAAAGACTGGCGTTGAA10864555ATACCTTTTCATTTCCCGCTCACCCCCGTGCCTTCTTTTCTCCTATTCAC
Andrena trimmerana genome assembly, chromosome: 1.
OX578059.1:6738650-6738669
TCCCGTACCTGTGTACCGCCTGACGTTGAA6738650ATACCTTTTCATTTCCCGCTTTCCCCCGTGCCTTCTTTTCTCCTGTTCAC
Myrrha octodecimguttata genome assembly, chromosome: 9.
OY294064.1:38086571-38086590
TCTTAAGACTTTTGAGGGCTCTGTCCCTGT38086571ATACCTTTTCATTTCCCGCTAATGACCTAGCTATCTTTAATTCTTGAGCT
Andrena bicolor genome assembly, chromosome: 3.
OY482666.1:2716636-2716655
TCCCGTACCTGTGTACCTCCTGACGTTGAA2716636ATACCTTTTCATTTCCCGCTTTCCCCCGTGCCTTCTTTTCTCCTATTCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCGGGAAATGAAAAGGTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCGGGAAATGAAAAGGTAT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.184 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=AGCGGGAAATGAAAAGGTAT&k=0&no_gap=0&offset=0&limit=50
0.228 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=ATACCTTTTCATTTCCCGCT&k=0&no_gap=0&offset=0&limit=39
0.233 | 0.005 | cgi_end;

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