GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:40:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 18.
CP133519.1:15385538-15385556
CAGGGACCCAACCCCAACGAGATTCAGCGC15385538AGCGTGCGTCAGATCTTCATCCACCCCAGCTACAACGTCAGCCCCGTGA
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 18.
CP133542.1:15645420-15645438
CAGGGACCCAACCCCAACGAGATTCAGCGC15645420AGCGTGCGTCAGATCTTCATCCACCCCAGCTACAACGTCAGCCCCGTGA
UCRCR01_02K04_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa02K04, mRNA sequence.
CF829094.1:47-65
AGTAATGAGTGTCAGATCCATACGGCGAGC47AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
UCRCR01_02M02_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa02M02, mRNA sequence.
CF829174.1:46-64
AGTAATGAGTGTCAGATCCATACGGCGAGC46AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
CGF1004282_D05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IF_D05 5', mRNA sequence.
CK933705.1:105-123
AGTAATGAGTGTCAGATCCATACGGCAAGC105AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CGF1004225_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D03 5', mRNA sequence.
CK934905.1:105-123
AGTAATGAGTGTCAGATCCATACGGCAAGC105AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CGF1004744_C05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_C05 5', mRNA sequence.
CK939896.1:123-141
AGTAATGAGTGTCAGATCCATACGGCAAGC123AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
UCRCS04_0001K04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K04, mRNA sequence.
CN181893.1:78-96
AGTAATGAGTGTCAGATCCATACGGCGAGC78AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
UCRCS05_0004E04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004E04, mRNA sequence.
CN187309.1:92-110
AGTAATGAGTGTCAGATCCATACGGCGAGC92AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
UCRCS05_0004F16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004F16, mRNA sequence.
CN187371.1:69-87
AGTAATGAGTGTCAGATCCATACGGCGAGC69AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
UCRCS08_0009C10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0009C10, mRNA sequence.
CV717540.1:86-104
AGTAATGAGTGTCAGATCCATACGGCAAGC86AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
C01018A05SK Veg1 Citrus clementina cDNA clone C01018A05, mRNA sequence.
CX288215.1:75-93
AGTAATGAGTGTCAGATCCATACGGCAAGC75AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
C05043E11SK Roots1 Citrus sinensis x Citrus trifoliata cDNA clone C05043E11, mRNA sequence.
CX294430.1:90-108
AGTAATGAGTGTCAGATCCATACGGCGAGC90AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
C05044F02SK Roots1 Citrus sinensis x Citrus trifoliata cDNA clone C05044F02, mRNA sequence.
CX294523.1:90-108
AGTAATGAGTGTCAGATCCATACGGCGAGC90AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
C20005C12SK OF2 Citrus clementina cDNA clone C20005C12, mRNA sequence.
CX308037.1:114-132
AGTAATGAGTGTCAGATCCATACGGCAAGC114AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
UCRCS08_64A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A04-A8-1-6.b, mRNA sequence.
CX675680.1:50-68
AGTAATGAGTGTCAGATCCATACGGCGAGC50AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
USDA-FP/ARO_16085 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-37_D05 5', mRNA sequence.
DN960255.1:77-95
AGTAATGAGTGTCAGATCCATACGGCGAGC77AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CS00-C1-101-025-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660765.1:91-109
AGTAATGAGTGTCAGATCCATACGGCAAGC91AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CS00-C1-101-041-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY662239.1:98-116
AGTAATGAGTGTCATTTCCATCCGGCAAGC98AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CS00-C1-102-101-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672519.1:101-119
AGTAATGAGTGTCAGATCCATACGGCGAGC101AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
CS00-C1-102-101-H10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672592.1:88-106
AGTAATGAGTGTCAGATCCATACGGCGAGC88AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
CS00-C1-102-084-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY674512.1:168-186
AGTAATGAGTGTCAGATCCATACGGCGAGC168AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
CS00-C3-700-033-F01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695170.1:113-131
AGTAATGAGTGTCAGATCCATACGGCGAGC113AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
CS00-C3-700-085-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY699631.1:101-119
AGTAATGAGTGTCAGATCCATACGGCGAGC101AGCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTC
CS00-C3-701-038-G08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704996.1:94-112
AGTAATGAGTGTCAGATCCATACGGCAAGC94AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CR05-C3-702-057-H02-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY806347.1:100-118
AGTAATGAGTGTCAGATCCATACGGCAAGC100AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CL06-C4-501-019-A06-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY873538.1:79-97
AGTAATGAGTGTCAGATCCATTCGGCGAGC79AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
CL06-C4-501-012-B08-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY874414.1:90-108
AGTAATGAGTGTCAGATCCATTCGGCGAGC90AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
C31101C03EF AbioticR1 Citrus reshni cDNA clone C31101C03, mRNA sequence.
FC869419.1:63-81
GTAATGTTTCTCAGATCCATACGGCAAGAC63AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
C31802E01EF StrCleopN Citrus reshni cDNA clone C31802E01, mRNA sequence.
FC924096.1:101-119
AGTAATGAGTGTCAGATCCATACGGCAAGC101AGCGTGCGTCAGATCTTCACTAATAGCCGCCGCCAACAACCATCATCTC
Burkholderia ubonensis MSMB22 chromosome I, complete sequence.
CP009488.1:3336868-3336886
GCACATGGGCTGCCCGCGCGGGGCGCGGGC3336868AGCGTGCGTCAGATCTTCAGCTTGGTAACCTTCGTGCCGTTGATCGACA
Burkholderia ubonensis strain MSMB0783 chromosome 1, complete sequence.
CP013420.1:608801-608819
GCATATGGACTGCCCGCGCGGGGCGCGGGC608801AGCGTGCGTCAGATCTTCAGCTTGGTGACCTTCGTGCCGTTGATCGACA
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:4067371-4067389
GAGATGATGGTTGTTGGCGGCGGCTATTAG4067371TGAAGATCTGACGCACGCTGCTTGCCGTATGGATCTGACACTCATTACT
Burkholderia ubonensis strain RF23-BP41 chromosome 1, complete sequence.
CP013370.1:2111925-2111943
TGTCGATCAACGGCACGAAGGTCACCAAGC2111925TGAAGATCTGACGCACGCTGCCCGCGTCCCGCGCGGGCAGTCCATGTGC
Burkholderia ubonensis strain MSMB2035 chromosome 1, complete sequence.
CP013414.1:2345116-2345134
TGTCGATCAACGGCACGAAGGTCACCAAGC2345116TGAAGATCTGACGCACGCTGCCCGCGCCCCGCGCGGGCAGCCTATGTGC
Burkholderia ubonensis strain MSMB1189WGS isolate MSMB1189WGS chromosome 1, complete sequence.
CP013446.1:2122035-2122053
TGTCGATCAACGGCACGAAGGTCACCAAGC2122035TGAAGATCTGACGCACGCTGCCCGCGCCCCGCGCGGGCAGTTCATTTGC
Burkholderia ubonensis strain MSMB1471WGS chromosome 1, complete sequence.
CP013463.1:2096425-2096443
TGTCGATCAACGGCACGAAGGTCACCAAGC2096425TGAAGATCTGACGCACGCTGCCCGCGCCCCGCGCGGGCAGCCCATGCGC
Novosphingobium sp. KA1 chromosome 2, complete sequence.
CP021248.1:1747178-1747196
CGAGTGGCACCCTTGCAAAGATACTGCCGA1747178TGAAGATCTGACGCACGCTGGCATAGGCCAGAAGGACAAGGAGCGGTAT
Burkholderia multivorans strain FDAARGOS_496 chromosome 1, complete sequence.
CP033856.1:389301-389319
TGTCGATCAACGGCACGAAGGTCACCAAGC389301TGAAGATCTGACGCACGCTGCCCATGTGCAAACGGCGATGCCCACGCGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCGTGCGTCAGATCTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCGTGCGTCAGATCTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.590 | 1.581 | search_plus_done; http://172.18.8.135:50400/match?q=AGCGTGCGTCAGATCTTCA&k=0&no_gap=0&offset=0&limit=50
1.710 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGATCTGACGCACGCT&k=0&no_gap=0&offset=0&limit=18
1.715 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).