GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:24:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 2033 from Patent WO2008034648.
FB782760.1:11-30
ATGAAGGCGG11AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 2247 from Patent WO2008034648.
FB782974.1:23-42
AAAACCAACAAAATGAAGGCGG23AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 7020 from Patent WO2008034648.
FB787747.1:11-30
ATGAAGGCGG11AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 7120 from Patent WO2008034648.
FB787847.1:23-42
AAAACCAACAAAATGAAGGCGG23AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 9530 from patent US 7960612.
GY267577.1:16-35
ACAAAATGAAGGCGG16AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 9536 from patent US 7960612.
GY267583.1:15-34
CAAAATGAAGGCGG15AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 15397 from patent US 8030546.
GY467622.1:16-35
ACAAAATGAAGGCGG16AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 15403 from patent US 8030546.
GY467628.1:15-34
CAAAATGAAGGCGG15AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 2033 from Patent EP2090662.
HB652819.1:11-30
ATGAAGGCGG11AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 2247 from Patent EP2090662.
HB653033.1:23-42
AAAACCAACAAAATGAAGGCGG23AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 7020 from Patent EP2090662.
HB657806.1:11-30
ATGAAGGCGG11AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 7120 from Patent EP2090662.
HB657906.1:23-42
AAAACCAACAAAATGAAGGCGG23AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 139 from patent US 9938536.
MI500896.1:41-60
GCCGATTAAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 139 from patent US 10472646.
MO514178.1:41-60
GCCGATTAAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 139 from patent US 10557143.
MO841207.1:41-60
GCCGATTAAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 15397 from patent US 10597667.
MO978775.1:16-35
ACAAAATGAAGGCGG16AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 15403 from patent US 10597667.
MO978781.1:15-34
CAAAATGAAGGCGG15AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 139 from patent US 11254948.
MY885113.1:41-60
GCCGATTAAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Sequence 139 from patent US 11339403.
OO232878.1:41-60
GCCGATTAAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
EL2200R Brassica embryo library (EL) Brassica napus cDNA clone EL2200 5', mRNA sequence.
CN827399.1:50-69
GTCCGTTAAAAACCTCCAAAATGAAGGCGG50AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
SS0497.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS0497.txt 5', mRNA sequence.
CV544786.1:14-33
AAAATGAAGGCGG14AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
23-E022722-021-012-N05-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022N0512Q, mRNA sequence.
CX194164.1:16-35
ACAAAATGAAGGCGG16AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Brassica oleracea var. viridis mRNA, clone: KALE-008A10, 5' end sequence.
DK458624.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
Brassica oleracea var. viridis mRNA, clone: KALE-099L09, 5' end sequence.
DK493686.1:41-60
CGCCGGTTAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Brassica oleracea var. viridis mRNA, clone: KALE-105E24, 5' end sequence.
DK495828.1:41-60
CGCCGGTTAAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Brassica oleracea var. viridis mRNA, clone: KALE-105K20, 5' end sequence.
DK495968.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
Brassica oleracea var. viridis mRNA, clone: KALE-111I11, 5' end sequence.
DK498206.1:44-63
CGCCGGTTAAAACCAACAAAATGAAGGCGG44AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
34ETGS48_UP_011_G03_11FEB2005_019 Brassica napus 34ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE430055.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
34ETGS48_UP_022_F03_09FEB2005_021 Brassica napus 34ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE431005.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
75ETGS60_UP_004_E04_02MAY2005_024 75ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE448248.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BNDH5DCT_UP_029_A06_27JAN2004_048 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
EE462681.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BNDH5DCT_UP_022_D07_30JAN2004_057 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
EV011549.1:42-61
GCCGATTTATAACCAACCAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGATGAGGAGCTA
RR3BF63TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552247.1:32-51
GAAAAAACAAAAAAATAAAAATGAAGGCGG32AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
RR3BH79TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552450.1:32-51
GAAAAAACAAAAAAATAAAAATGAAGGCGG32AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
BR081459 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-011H07 5', mRNA sequence.
EX095169.1:41-60
CCGACTTATAAACCAACAAAATGAAGGCGG41AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BR107909 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-32F02 5', mRNA sequence.
EX124079.1:10-29
TGAAGGCGG10AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BR112697 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-12F04 3', mRNA sequence.
EX128867.1:4-23
CGG4AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
RS1BL73TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX886759.1:34-53
ATTAAAACACAAAAAAAAACATGAAGGCGG34AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
RS2E641TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940404.1:28-47
TAAACAAAAAGATAAAAATGAAGTCGG28AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
BN18DYSC_UP_009_G11_15FEB2008_083 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG553711.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BN18DYSC_UP_040_D06_19FEB2008_042 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG556381.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BN18DYSC_UP_164_F03_2APR2008_021 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG566945.1:18-37
GAACAAAATGAAGGCGG18AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BN18DYSC_UP_198_G04_4APR2008_020 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG569891.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BN18DYSC_UP_202_B06_7APR2008_046 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG570195.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGTGGAGCTA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF04E02, 5'-end sequence.
FY064870.1:42-61
GCCGATTAAAAACCAACAAAATGAAGGCGG42AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
e09_04na_1j.s 04na Brassica napus cDNA clone e09_04na_1j 5, mRNA sequence.
GT077121.1:20-39
AAACAACAAATGAAGGCGG20AGCTAAATTTACCGGCGGGATCCGATTTCACCCGACGGACGAGGAGCTAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_11729.
FX705472.1:29-48
CGATTAAAAACCAACAAAATGAAGGCGG29AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
BOMLD74TF BO_2_3_KB Brassica oleracea genomic clone BOMLD74, genomic survey sequence.
BH679445.1:318-337
GCCGATTAAAAACCAACAAAATGAAGGCGG318AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
Brassica napus NAC-domain protein 5-1 (NAC5-1) mRNA, complete cds.
AY245881.1:15-34
CAAAATGAAGGCGG15AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:1518007-1518026
GCCGATTAAAAACCAACAAAATGAAGGCGG1518007AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Brassica napus NAC transcription factor 102-1 (NAC102-1.1) mRNA, complete cds.
KF974766.1:11-30
ATGAAGGCGG11AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAGGAGCTA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:10864673-10864692
CCGATTAAAACAAAAAAAAAATGAAGGCGG10864673AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:1667914-1667933
GAACAAAGAACTTTCCCAAAATGAAGGCGG1667914AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:10864673-10864692
CCGATTAAAACAAAAAAAAAATGAAGGCGG10864673AGCTAAATTTACCGGCGGGATTCCGATTTCACCCGACGGACGAAGAGCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCTAAATTTACCGGCGGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTAAATTTACCGGCGGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.427 | 2.418 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTAAATTTACCGGCGGGA&k=0&no_gap=0&offset=0&limit=50
2.543 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=TCCCGCCGGTAAATTTAGCT&k=0&no_gap=0&offset=0&limit=0
2.543 | 0.000 | cgi_end;

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