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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 02:31:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0084634 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160772.1:676-695
AGAGCAATGGAGGGAGGCACATGCAGCCTC676AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08H14, 3'-end sequence.
FY070986.1:598-617
AGAGCAATGGAGGGAGGCACATGCAACCTC598AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31807.
FX759046.1:175-194
AGAGCAATGGAGGGAGGCACATGCAACCTC175AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
KBrB013E16R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB013E16, genomic survey sequence.
DX019990.1:348-367
AGAGCAATGGAGGGAGGCACATGCAGCCTC348AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Brassica napus GSS, clone JBnB090A15, end read, primer SACR2(reverse).
FP023128.1:354-373
AGAGCAATGGAGGGAGGCACATGCAGCCTC354AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Homo sapiens chromosome UNK clone CTD-2166G15, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC079297.3:12144-12163
GATGTGAATTTCAGAGAGCAAGTAACAAGT12144AGCTCAGTGTGGCTAAAGAGGAAAAGGTTGAACTATTCCGCAATTACTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:152906-152925
AGAGCAATGGAGGGAGGCACATGCAGCCTC152906AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59544982-59545001
AGAGCAATGGAGGGAGGCACATGCAGCCTC59544982AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGTCTGAGC
Capsella bursa-pastoris isolate WGS_leaf chromosome 5.
CP144187.1:14771794-14771813
AGAGCAATGGAGGGTGGCACATGCAACCTC14771794AGCTCAGTGTGGCTAAAGAGGCCACTTGCTGCTGCTGCATGAGCTTGAGC
Capsella bursa-pastoris isolate WGS_leaf chromosome 13.
CP144195.1:17611337-17611356
AGAGCAATGGAGGATGGCACATGCAACCTC17611337AGCTCAGTGTGGCTAAAGAGGCCACTTGCTGCTGCTGCATGAGCTTGAGC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:43396577-43396596
AGAGCAATGGAGGGAGGCACATGCAGCCTC43396577AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Brassica rapa genome, scaffold: A09.
LR031568.1:47719784-47719803
AGAGCAATGGAGGGAGGCACATGCAGCCTC47719784AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR824637.1:484482049-484482068
GGGCCCACTCGGTAATACATCATCATAATG484482049AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828120.1:472055645-472055664
GGGCCCACTCGGTAATACATCATCATAATG472055645AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828158.1:463142934-463142953
GGGCCCACTCGGTAATACATCATCATAATG463142934AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828165.1:499245500-499245519
GGGCCCACTCGGTAATACATCATCATAATG499245500AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828193.1:488901541-488901560
GGGCCCACTCGGTAATACATCATCATAATG488901541AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58186288-58186307
AGAGCAATGGAGGGAGGCACATGCAGCCTC58186288AGCTCAGTGTGGCTAAAGAGCCCACTAGCTGCTGCAACATGAGCCTGAGC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OX459907.1:478747711-478747730
GGGCCCACTCGGTAATACATCATCATAATG478747711AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX459921.1:472667900-472667919
GGGCCCACTCGGTAATACATCATCATAATG472667900AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OX459982.1:475012223-475012242
GGGCCCACTCGGTAATACATCATCATAATG475012223AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX459989.1:476940493-476940512
GGGCCCACTCGGTAATACATCATCATAATG476940493AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OX460003.1:477810018-477810037
GGGCCCACTCGGTAATACATCATCATAATG477810018AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460059.1:478112292-478112311
GGGCCCACTCGGTAATACATCATCATAATG478112292AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460080.1:477520709-477520728
GGGCCCACTCGGTAATACATCATCATAATG477520709AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460143.1:479030210-479030229
GGGCCCACTCGGTAATACATCATCATAATG479030210AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460227.1:479349565-479349584
GGGCCCACTCGGTAATACATCATCATAATG479349565AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460269.1:484806561-484806580
GGGCCCACTCGGTAATACATCATCATAATG484806561AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX460304.1:478462020-478462039
GGGCCCACTCGGTAATACATCATCATAATG478462020AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX638754.1:481195429-481195448
GGGCCCACTCGGTAATACATCATCATAATG481195429AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Hordeum vulgare genome assembly, chromosome: 6H.
OX638761.1:476809745-476809764
GGGCCCACTCGGTAATACATCATCATAATG476809745AGCTCAGTGTGGCTAAAGAGTTAGTCACGGTATCATGTGTTACGGAACTA
Cosmia trapezina genome assembly, chromosome: 17.
LR991036.1:6891988-6892007
CGACAAGAGGTGTGGCATCGTTTGTGATGT6891988AGCTCAGTGTGGCTAAAGAGTGAGACGGCGACATTTTTTTACCTTTTTCT
Homo sapiens BAC clone RP11-279E17 from 2, complete sequence.
AC018678.9:58124-58143
AAAGTAATTGCGGAATAGTTCAACCTTTTC58124CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Homo sapiens 2 BAC RP11-105E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC026337.29:17881-17900
AAAGTAATTGCGGAATAGTTCAACCTTTTC17881CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:143295381-143295400
AAAGTAATTGCGGAATAGTTCAACCTTTTC143295381CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:147549874-147549893
AAAGTAATTGCGGAATAGTTCAACCTTTTC147549874CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:146968648-146968667
AAAGTAATTGCGGAATAGTTCAACCTTTTC146968648CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:146743360-146743379
AAAGTAATTGCGGAATAGTTCAACCTTTTC146743360CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Danio kyathit genome assembly, chromosome: 14.
LR812532.1:56587765-56587784
CATTAATACAATTCTTTAAATAAAACAAAC56587765CTCTTTAGCCACACTGAGCTAATAAAGCCCCATCTATGACTCTGTGCCAC
Eukaryotic synthetic construct chromosome 2.
CP034498.1:147847298-147847317
AAAGTAATTGCGGAATAGTTCAACCTTTTC147847298CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
Eukaryotic synthetic construct chromosome 2.
CP034523.1:147847298-147847317
AAAGTAATTGCGGAATAGTTCAACCTTTTC147847298CTCTTTAGCCACACTGAGCTACTTGTTACTTGCTCTCTGAAATTCACATC
39RDBRT_UP_049_D05_22JUL2004_041 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX273040.1:475-494
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG475CTCTTTAGCCACACTGAGCTGAGGGTGCATGTGCCTCCCTCCATTGC
BNYS2DCT_UP_015_A08_01MAR2005_064 Brassica napus seeds BNYS2DCT Brassica napus cDNA 5', mRNA sequence.
EE474528.1:470-489
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG470CTCTTTAGCCACACTGAGCTGAGGCTGCATGTGCCTCCCTCCATTGCTCT
BNSCS3CT_UP_055_B02_04MAY2007_014 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV040878.1:475-494
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG475CTCTTTAGCCACACTGAGCTGAGGCTGCATGTGCCTCCCTCCATTGCTCT
BR077519 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-085H01 5', mRNA sequence.
EX091229.1:429-448
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG429CTCTTTAGCCACACTGAGCTGAGGCTGCATGTGCCTCCCTCCATTGCTCT
BR084181 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-057C04 5', mRNA sequence.
EX097891.1:487-506
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG487CTCTTTAGCCACACTGAGCTGAGGCTGCATGTGCCTCCCTCCATTGCTCT
BR084971 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-007H04 5', mRNA sequence.
EX098681.1:483-502
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG483CTCTTTAGCCACACTGAGCTGAGGCTGCATGTGCCTCCCTCCATTGCTCT
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08H14, 5'-end sequence.
FY066390.1:476-495
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG476CTCTTTAGCCACACTGAGCTGAGGTTGCATGTGCCTCCCTCCATTGCTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9536.
FX704971.1:476-495
GCTCAGGCTCATGTTGCAGCAGCTAGTGGG476CTCTTTAGCCACACTGAGCTGAGGCTGCATGTGCCTCCCTCCATTGCTCT
Pan troglodytes DNA, clone: PTB-127O07.F.
AG119445.1:503-522
AAAGTAATTGCGGAATAGTTCAACCTTTTC503CTCTTTAGCCACACTGAGCTACTTGTTACTAGCTCTCTGAAATTCACATC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX590743.1:154162445-154162464
TCGTTCCGTAATACATCATCCCGTGGCTAA154162445CTCTTTAGCCACACTGAGCTCATTATGATGATGGATTACCGAGTGGGCCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX638772.1:154464265-154464284
TCGTTCCGTAATACATCATCCCGTGGCTAA154464265CTCTTTAGCCACACTGAGCTCATTATGATGATGGATTACCGAGTGGGCCC
Cosmia pyralina genome assembly, chromosome: 16.
OX276357.1:19665749-19665768
AGAAAAGGGTAAAAAAATGTCCCCATCTCA19665749CTCTTTAGCCACACTGAGCTACATCACAAACGATGCCTCACCTCTTATCG

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