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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:57:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:43505131-43505152
TAAAGAAGATGGAAGAAGCTGGTGTCTCTG43505131AGCTCCCCTCGAAGCAAGTTATATGGTAAGGCAGCAGAAATAGAGTGTATAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:43505131-43505152
TAAAGAAGATGGAAGAAGCTGGTGTCTCTG43505131AGCTCCCCTCGAAGCAAGTTATATGGTAAGGCAGCAGAAATAGAGTGTATAT
RS2A206TR RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW727081.1:300-321
ATATACACTCTATTTCTGCTGCCTTACCAT300ATAACTTGCTTCGAGGGGAGCTCAGAGACACCAGCTTCTTCCATCTTCTTTA
RS2A206JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW727379.1:360-381
ATATACACTCTATTTCTGCTGCCTTACCAT360ATAACTTGCTTCGAGGGGAGCTCAGAGACACCAGCTTCTTCCATCTTCTTTA
RS2EL96JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY937271.1:391-412
ATATACACTCTATTTCTGCTGCCTTACCAT391ATAACTTGCTTCGAGGGGAGCTCAGAGACACCAGCTTCTTCCATCTTCTTTA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_6305.
FX662343.1:262-283
ATATACACTCTATTTCTGCTGCCTTACCAT262ATAACTTGCTTCGAGGGGAGCTCAGAGACACCAGCTTCTTCCATCTTCTTTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_45634.
FX739391.1:304-325
ATATACACTCTATTTCTGCTGCCTTACCAT304ATAACTTGCTTCGAGGGGAGCTCAGAGACACCAGCTTCTTCCATCTTCTTTA
TSA: Raphanus sativus RS25586 mRNA sequence.
JT810133.1:117-138
ATATACACTCTATTTCTGCTGCCTTACCAT117ATAACTTGCTTCGAGGGGAGCTCAGAGACACCAGCTTCTTCCATCTTCTTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCTCCCCTCGAAGCAAGTTAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTCCCCTCGAAGCAAGTTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.298 | 0.289 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTCCCCTCGAAGCAAGTTAT&k=0&no_gap=0&offset=0&limit=50
0.622 | 0.324 | search_minus_done; http://172.18.8.135:50400/match?q=ATAACTTGCTTCGAGGGGAGCT&k=0&no_gap=0&offset=0&limit=48
0.626 | 0.004 | cgi_end;

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