GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:16:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum torvum mRNA, clone: TVR28B24, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS120838.1:241-260
ATTTCACGTACAACCGCAGCAGTTTCACCA241AGCTGTCCTGTGGTTTTCAGAGAATATATTGGAGCTATGGGCACGAATGT
Cyprideis torosa.
OB660038.1:209372-209391
TCTTCTCCGGTCTCGACCCATGCCAGCAGC209372AGCTGTCCTGTGGTTTTCAGAGGATAACATACCGTCGCGTTACTGGCAGT
Chelon labrosus genome assembly, chromosome: 4.
OY741292.1:27561569-27561588
GAGCAGCAGGGAAGCATGGGGTGGATCTGA27561569CTGAAAACCACAGGACAGCTTGTCAATCTCTCCAGCCCAGACTAGTCAAT
Solanum lycopersicum Micro-Tom DNA, chromosome 11, draft genome sequence.
AP028945.1:61405504-61405523
ACATTCTTGCCTAGAGCTCCAATATATTCT61405504CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCGGTTATACGTGAAAT
Solanum lycopersicum cultivar I-3 chromosome 11.
CP023767.1:55971701-55971720
ACATTCTTGCCTAGAGCTCCAATATATTCT55971701CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCGGTTATACGTGAAAT
Solanum tuberosum cultivar P8 chromosome 11.
CP046684.1:44874046-44874065
ACATTCTTGCCTAGAGCTCCAATATATTCT44874046CTGAAAACCACAGGACAGCTTGGTGAAACTRTCGCGGTTAKACGYGAAAT
Solanum tuberosum cultivar Solyntus chromosome 11.
CP055244.1:56437803-56437822
ACATTCTTGCCTAGAGCTCCAATATATTCT56437803CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCAGTTATACATGAAAT
Solanum verrucosum cultivar 11H23 chromosome 11.
CP133622.1:44920772-44920791
ACATTCTTGCCTAGAGCTCCAATATATTCT44920772CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCGGTTATACGTGAAAT
Solanum pennellii chromosome ch11, complete genome.
HG975450.1:65843843-65843862
ACATTCTTGCCTAGCGCTCCAATATATTCT65843843CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCGGTTATACGTGAAAT
Solanum lycopersicum chromosome ch11, complete genome.
HG975523.1:53052402-53052421
ACATTCTTGCCTAGAGCTCCAATATATTCT53052402CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCGGTTATACGTGAAAT
Solanum lycopersicum genome assembly, chromosome: 11.
OU640354.1:56881687-56881706
ACATTCTTGCCTAGAGCTCCAATATATTCT56881687CTGAAAACCACAGGACAGCTTGGTGAAACTGTCGCGGTTATACGTGAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGCTGTCCTGTGGTTTTCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTGTCCTGTGGTTTTCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTGTCCTGTGGTTTTCAG&k=0&no_gap=0&offset=0&limit=50
0.263 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAAAACCACAGGACAGCT&k=0&no_gap=0&offset=0&limit=48
0.269 | 0.006 | cgi_end;

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