GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:43:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST640242 MTUS Medicago truncatula cDNA clone MTUS-54G11, mRNA sequence.
CA922524.1:616-638
CTACGACTTGAATTCCCATTTGAGGCATGG616AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTATGCCAGT
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:60822294-60822316
CTACGACTTGAATTACCATTTGAGGCATGG60822294AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTATGCCAGT
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:60006769-60006791
CTACGACTTGAATTACCATTTGAGGCATGG60006769AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTATGCCAGT
Medicago arabica genome assembly, chromosome: 2.
OX326965.1:60278047-60278069
CTACGACTTGAATTCCCATTTGAGGCATGG60278047AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTATGCCAGT
Trifolium dubium genome assembly, chromosome: 3.
OX638064.1:55364824-55364846
CTACGACTTGAATTCCCATTTGAGACATGG55364824AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTATGCCAGA
Trifolium dubium genome assembly, chromosome: 13.
OX638074.1:32410004-32410026
CTACGACTTGAATTCCCATTTGAGACATGG32410004AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTGTGCCAGA
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:50860413-50860435
CTACGACTTGAATTACCATTTGAGGCATGG50860413AGCTTCACTGGAAGGTTCAAATACATCTCAAAGTTAGATGAAGTTATGCCAGT
Sequence 117 from patent US 10087458.
MM030955.1:823-845
ACTGGCATAACTTCATCTAACTTTGAGATG823TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Sequence 118 from patent US 10087458.
MM030956.1:823-845
ACTGGCATAACTTCATCTAACTTTGAGATG823TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Sequence 169 from patent US 10087458.
MM030957.1:4632-4654
ACTGGCATAACTTCATCTAACTTTGAGATG4632TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Sequence 170 from patent US 10087458.
MM030958.1:5942-5964
ACTGGCATAACTTCATCTAACTTTGAGATG5942TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Sequence 90 from patent US 10337022.
MO168297.1:817-839
ACTGGCATAACTTCATCTAACTTTGAGATG817TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Sequence 92 from patent US 10337022.
MO168299.1:847-869
ACTGGCATAACTTCATCTAACTTTGAGATG847TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAG
Sequence 87 from patent US 10487337.
MO546187.1:817-839
ACTGGCATAACTTCATCTAACTTTGAGATG817TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Sequence 89 from patent US 10487337.
MO546189.1:847-869
ACTGGCATAACTTCATCTAACTTTGAGATG847TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAG
NF082B10FL1F1080 Developing flower Medicago truncatula cDNA clone NF082B10FL 5', mRNA sequence.
BQ148766.1:390-412
ACTGGCATAACTTCATCTAACTTTGAGATG390TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Medicago truncatula clone MTYFP_FQ_FR_FS1G-C-15 unknown mRNA.
BT053543.1:793-815
ACTGGCATAACTTCATCTAACTTTGAGATG793TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Medicago truncatula BIG SEEDS 1 (BS1) mRNA, complete cds.
KM668032.1:823-845
ACTGGCATAACTTCATCTAACTTTGAGATG823TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Medicago sativa BIG SEEDS 1 (BS1) mRNA, complete cds.
KM668033.1:823-845
ACTGGCATAACTTCATCTAACTTTGAGATG823TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAG
Trifolium repens cultivar Huia PEAPOD (PPD) mRNA, complete cds.
MZ736871.1:847-869
ACTGGCATAACTTCATCTAACTTTGAGATG847TATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCTTCACTGGAAGGTTCAAATA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTTCACTGGAAGGTTCAAATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.216 | 0.207 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTCACTGGAAGGTTCAAATA&k=0&no_gap=0&offset=0&limit=50
0.782 | 0.566 | search_minus_done; http://172.18.8.135:50400/match?q=TATTTGAACCTTCCAGTGAAGCT&k=0&no_gap=0&offset=0&limit=43
0.791 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).