GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

BNZB_RP_011_G01_23APR2004_003 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE557117.1:174-193

TCAAGAAACCATATAATAACATAAAAATAG174AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

0170734 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV135608.1:158-177

TCAAGAAACCATATAATAACATAAAAATAG158AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

0164743 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163542.1:173-192

TCAAGAAACCATATAATAACATAAAAATAG173AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

0148250 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169630.1:239-258

TCAAGAAACCATACAATAACATAAAAATAG239AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_889.
FX724439.1:164-183

TCAAGAAACCATACAATAACATAAAAATAG164AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49346.
FX787001.1:138-157

TCAAGAAACCATACAATAACATAAAAATAG138AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

BOGVF13TR BOGV Brassica oleracea genomic clone BOGVF13, genomic survey sequence.
BH537178.1:45-64

TCAAGAAACCATACAATAACATAAAAATAT45AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

Eustoma grandiflorum DNA, chromosome 11, draft genome sequence.
AP025050.1:31448482-31448501

TGTGACAACAAGGCGACAATATCAAGGATA31448482AGCTTGAGAGTGGTGTTGTTGAGATTCCGTTTGTGCACACAAAAGAACAG

Eustoma grandiflorum DNA, chromosome 11, draft genome sequence.
AP025050.1:31559958-31559977

TGTGACAACAAGGCGGCAATATCAAGGATA31559958AGCTTGAGAGTGGTGTTGTTGAGATTCCGTTTGTGCACACAAAAGAACAG

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:9917579-9917598

TCAAGAAACCATACAATAACATAAAAATAG9917579AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA

Scytonema sp. HK-05 DNA, nearly complete genome.
AP018194.1:4587325-4587344

ATAACATCCCAAACGACAGAGGAGTTTAAA4587325AGCTTGAGAGTGGTGTTGTTCCAGACGGTTAAACTGACTGGTAACTAAAT

BN25.047K01F020109 BN25 Brassica napus cDNA clone BN25047K01, mRNA sequence.
CD823090.1:268-287

TCAGCGTTGTCCACCCTGAAGAGTAAATTC268AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

38RDBRM_UP_002_D09_30MAR2004_073 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX265703.1:266-285

TCAGCGTTGTCCACCCTGAAGAGTAAATTC266AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

39RDBRT_UP_044_G06_21JUL2004_036 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272770.1:287-306

TCAGCGTTGTCCACCCTGAAGAGTAAATTC287AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica oleracea var. viridis mRNA, clone: KALE-055H05, 5' end sequence.
DK476738.1:733-752

TCAGCGTTGTCCACCCTGAAGAGTAAATTC733AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica oleracea var. viridis mRNA, clone: KALE-055H05, 3' end sequence.
DK536341.1:633-652

TCAGCGTTGTCCACCCTGAAGAGTAAATTC633AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

32ETGS24_UP_008_C07_12MAR2004_059 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE426129.1:268-287

TCAGCGTTGTCCACCCTGAAGAGTAAATTC268AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

35ETGS60_UP_001_H07_24MAR2004_049 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE431218.1:272-291

TCAGCGTTGTCCACCCTGAAGAGTAAATTC272AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

74ETGS48_UP_014_A08_28APR2005_064 74ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE447383.1:276-295

TCAGCGTTGTCCACCCTGAAGAGTAAATTC276AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

BNBS8DCT_UP_026_B10_17APR2005_078 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE460235.1:277-296

TCAGCGTTGTCCACCCTGAAGAGTAAATTC277AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

24RDBNH_UP_073_H01_01NOV2005_001 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE509739.1:258-277

TCAGCGTTGTCCACCCTGAAGAGTAAATTC258AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

36RDBRG_UP_012_H08_10JUN2004_050 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE517153.1:278-297

TCAGCGTTGTCCACCCTGAAGAGTAAATTC278AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

39RDBRT_UP_060_F07_30NOV2005_053 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
EE529472.1:273-292

TCAGCGTTGTCCACCCTGAAGAGTAAATTC273AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

BMSB01-T7-08-F01 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG019617.1:269-288

TCAGCGTTGTCCACCCTGAAGAGTAAATTC269AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

BNARO2GH_T3_003_H04_15DEC2006_018 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES913275.1:252-271

TCAGCGTTGTCCACCCTGAAGAGTAAATTC252AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

36RDBRG_UP_104_H11_20JAN2006_081 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES931553.1:308-327

TCAGCGTTGTCCACCCTGAAGAGTAAATTC308AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCATGA

39RDBRT_UP_093_A03_25JAN2006_031 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
ES937205.1:282-301

TCAGCGTTGTCCACCCTGAAGAGTAAATTC282AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

9RDBNGA_UP_146_F03_18SEP2005_021 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES955997.1:254-273

TCAGCGTTGTCCACCCTGAAGAGTAAATTC254AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

9RDBNGA_UP_148_F05_18SEP2005_037 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES956167.1:134-153

TCAGCGTTGTCCACCCTGAAGAGTAAATTC134AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

40JKME7D_UP_037_E07_18JUN2006_055 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES980811.1:254-273

TCAGCGTTGTCCACCCTGAAGAGTAAATTC254AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

BNSCS4CT_UP_150_E07_22MAY2007_055 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV069983.1:273-292

TCAGCGTTGTCCACCCTGAAGAGTAAATTC273AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

0171682 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV136058.1:258-277

TCAGCGTTGTCCACCCTGAAGAGTAAATTC258AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

0148198 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169617.1:171-190

TCAGCGTTGTCCACCCTGAAGAGTAAATTC171AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

0156264 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV182754.1:274-293

TCAGCGTTGTCCACCCTGAAGAGTAAATTC274AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:38163178-38163197

TCAGCGTTGTCCACCCTGAAGAGTAAATTC38163178AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica napus genome assembly, chromosome: A07.
HG994361.1:19725003-19725022

TCAGCGTTGTCCACCCTGAAGAGTAAATTC19725003AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA

Brassica napus genome assembly, chromosome: C06.
HG994370.1:31933748-31933767

TCAGCGTTGTCCACCCTGAAGAGTAAATTC31933748AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica rapa genome, scaffold: A07.
LR031574.1:18665471-18665490

TCAGCGTTGTCCACCCTGAAGAGTAAATTC18665471AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:28609293-28609312

TCAGCGTTGTCCACCCTGAAGAGTAAATTC28609293AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:18956779-18956798

TCAGCGTTGTCCACCCTGAAGAGTAAATTC18956779AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

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Debug Info:

0.009 | 0.009 | search_start;
0.427 | 0.418 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTGAGAGTGGTGTTGTT&k=0&no_gap=0&offset=0&limit=50
2.106 | 1.679 | search_minus_done; http://172.18.8.135:50400/match?q=AACAACACCACTCTCAAGCT&k=0&no_gap=0&offset=0&limit=38
2.125 | 0.020 | cgi_end;

Summary:

Results:

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