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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:10:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Betula platyphylla Unigene18667_All.Beplwood mRNA sequence.
KA258588.1:454-473
CTACAAACAGAAAGCAATGTGTTTCTACCC454AGCTTGGGCTTATGCCATTCCAGCAAGTGTTTTAAAGATTCCTATTTCAT
Alnus glutinosa genome assembly, chromosome: 12.
OY340909.1:18551694-18551713
CTACAAACAGAAAGCAATGTGTTTCTACCC18551694AGCTTGGGCTTATGCCATTCCATCAAGTGTTCTAAAGATTCCTATTTCAT
Alnus glutinosa genome assembly, chromosome: 12.
OY340909.1:18570008-18570027
CTACAAACAGAAAGCAATGTGTTTCTACCC18570008AGCTTGGGCTTATGCCATTCCAGCAAGTGTTCTAAAGATTCCTATTTCAT
Fragaria x ananassa cultivar Benihoppe chromosome 24.
CP139752.1:3722857-3722876
ATGAAACAGGTACTTTCAGTAGTGTTGCTG3722857GAATGGCATAAGCCCAAGCTGGATAAAAACACAGGTCTTTCTGCTTATAG
Fragaria x ananassa cultivar Benihoppe chromosome 22.
CP139754.1:3958448-3958467
ATGAAACAGGTACTTTCAGTAGTGTTGCTG3958448GAATGGCATAAGCCCAAGCTGGATAAAAACACAGGTCTTTCTGCTTATAG
Fragaria x ananassa cultivar Benihoppe chromosome 21.
CP139755.1:4557484-4557503
ATGAAACAGGTACTTTCAGTAGTGTTGCTG4557484GAATGGCATAAGCCCAAGCTGGATAAAAGCACAGGTCCTTCTGCTTATAG
Fagus sylvatica genome assembly, chromosome: 1.
OU015761.1:4536395-4536414
ATGAAAGGGGAAACTTCAAAACACTTGCTG4536395GAATGGCATAAGCCCAAGCTGGGTAAAAACAAAATTATTTTTGTTTGTAG
Populus nigra genome assembly, chromosome: 6.
OX637677.1:6504975-6504994
GTGAAAATGGAATCTTTAGTATAGAGGCAG6504975GAATGGCATAAGCCCAAGCTGGATATAGGTAGAATGATCTTTGTTTTTGA
Alnus glutinosa genome assembly, chromosome: 12.
OY340909.1:23065935-23065954
ATGAAATAGGAATCTTTAGAACACTTGCTG23065935GAATGGCATAAGCCCAAGCTGGGTAGAAACACATTGCTTTCTGTTTGTAG
Alnus glutinosa genome assembly, chromosome: 12.
OY340909.1:23083737-23083756
ATGAAATAGGAATCTTTAGAACACTTGATG23083737GAATGGCATAAGCCCAAGCTGGGTAGAAACACATTGCTTTCTGTTTGTAG
Euonymus europaeus genome assembly, chromosome: 6.
OY756962.1:23432940-23432959
ACGAAATAGGAATTTTCAAAATGGCTGCTG23432940GAATGGCATAAGCCCAAGCTGGGTAGAAATAAAGTTCTTTCTGTTTGTAG
Inga laurina genome assembly, chromosome: 6.
OY979706.1:12148926-12148945
ATCTTTATAACCTACACACTAATACAAATG12148926GAATGGCATAAGCCCAAGCTGATTTCAAATGATTTGAGGATTTTTGGGAG
Brachypalpus laphriformis genome assembly, chromosome: 3.
OX246755.1:14769674-14769693
GATAGGCGTGTACAAATATTTCTTCGAAAC14769674GAATGGCATAAGCCCAAGCTTGAGTACTGTTCTCATGCTGAAGCTCGGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCTTGGGCTTATGCCATTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTTGGGCTTATGCCATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.187 | 0.178 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTGGGCTTATGCCATTC&k=0&no_gap=0&offset=0&limit=50
0.271 | 0.084 | search_minus_done; http://172.18.8.135:50400/match?q=GAATGGCATAAGCCCAAGCT&k=0&no_gap=0&offset=0&limit=47
0.278 | 0.007 | cgi_end;

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