GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:13:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Meles meles genome assembly, chromosome: 14.
OV277455.1:67579442-67579461
GATGAAAAATGGAGCTGGTGCTGGTGAGTT67579442AGCTTTGACTGCAGAGAAGCAGAGTGAAACTCTAGGGTTGAGAGAGCAAC
Sequence 11 from patent US 5998702.
AR093267.1:72-91
CTTTGAGGAAACAAGAGAAACAAAAATGGT72AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCCG
Sequence 20317 from Patent WO2008034648.
FB801044.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCCG
Sequence 20337 from Patent WO2008034648.
FB801064.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
Sequence 72316 from Patent WO2008034648.
FB853043.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCCG
Sequence 72336 from Patent WO2008034648.
FB853063.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
Sequence 20317 from Patent EP2090662.
HB671103.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCCG
Sequence 20337 from Patent EP2090662.
HB671123.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
Sequence 72316 from Patent EP2090662.
HB723102.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCCG
Sequence 72336 from Patent EP2090662.
HB723122.1:6-25
ATGGT6AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
DHBN6DCT_UP_002_A10_16FEB2005_080 BRASSICA NAPUS SEEDS BNDH6DCT Brassica napus cDNA 5', mRNA sequence.
EE483354.1:83-102
TAAAACCCCTTTTGAAGAAACAAAAATGGT83AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
0199524 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV185636.1:127-146
TAAAACCCCTTTTGAAGAAACAAAAATGGT127AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
RR4B231TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568899.1:91-110
TTTGAAAAAAACAAGAGAAACAAAAATGGT91AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCTG
RR1FE82TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD535117.1:89-108
CTTTGAAAAAACAAGAGAAACAAAAATGGT89AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCTG
RR4EQ46TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD556889.1:87-106
CTTTGAAAAAACAAGAGAAACAAAAATGGT87AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCTG
BOGRE18TR BOGR Brassica oleracea genomic clone BOGRE18, genomic survey sequence.
BH449024.1:132-151
TAAAACCCCTTTTGAAGAAACAAAAATGGT132AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:39783280-39783299
TAAAACCCCTTTTGAAGAAACAAAAATGGT39783280AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
Hordeum bulbosum genome assembly, chromosome: 5H_1.
OY737644.1:476638294-476638313
TAGGGATAGGAGGAGATGGAGATTGGAGTG476638294AGCTTTGACTGCAGAGAAGCGTTCATCCGGAGTGGGGATATATGTGAGGT
B. juncea mRNA for 1-Aminocyclopropane-1-carboxylate synthase.
X72676.1:72-91
CTTTGAGGAAACAAGAGAAACAAAAATGGT72AGCTTTGACTGCAGAGAAGCAAGATCAGAACCTACTGTCAAGAATGGCCG
B.oleracea mRNA for ACC synthase.
X82273.1:63-82
TAAAACCCCTTTTGAAGAAACAAAAATGGT63AGCTTTGACTGCAGAGAAGCAAGACCAGAACCTACTGTCGAGAATGGCCG
1_Tps_b3v08.
OD002921.1:58174-58193
GGGTTCTTTAAAGGGTTATATATATGTGGC58174AGCTTTGACTGCAGAGAAGCCCAATGTCTAGAGAGTGAAAACCAAGTACC
Sciurus carolinensis genome assembly, chromosome: 15.
LR738605.1:8762566-8762585
CTGCAATATGAATTTTCTGTGATCACTGCA8762566GCTTCTCTGCAGTCAAAGCTCCAGGAATGGAGAGTCATCTCTGGAGTATG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: Z.
OU383776.1:16697730-16697749
ACAGTACTGAGCCCAACACAGGCTTTTGTT16697730GCTTCTCTGCAGTCAAAGCTACATATTCTTAGGCCTTAGGGGGCAGCTAT
RR4B231JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV573523.1:531-550
CAGCCATTCTTGACAGTAGGTTCTGATCTT531GCTTCTCTGCAGTCAAAGCTACCATTTTTGTTTCTCTTGTTTTTTTCAAA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:29009116-29009135
CGGCCATTCTCGACAGTAGGTTCTGGTCTT29009116GCTTCTCTGCAGTCAAAGCTACCATTTTTGTTTCTTCAAAAGGGGTTTTA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:28925689-28925708
CGGCCATTCTCGACAGTAGGTTCTGGTCTT28925689GCTTCTCTGCAGTCAAAGCTACCATTTTTGTTTCTTCAAAAGGGGTTTTA
1_Tdi_b3v08.
OA568103.1:17035-17054
GGTACTTGGTTTTCACTCTCTAGACATTGG17035GCTTCTCTGCAGTCAAAGCTGCCACATATATATAACCCTTTAAAGAACCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCTTTGACTGCAGAGAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTTTGACTGCAGAGAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.876 | 0.868 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTTGACTGCAGAGAAGC&k=0&no_gap=0&offset=0&limit=50
1.059 | 0.183 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTCTCTGCAGTCAAAGCT&k=0&no_gap=0&offset=0&limit=29
1.063 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).