GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:03:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Carassius carassius genome assembly, chromosome: 37.
OY720504.1:9967266-9967285
GCTGTATTACAGAAGAGCTGAGACTGAAAG9967266AGGAGGAGAGGTTATTAGTGGCCCACCATTCATCTTTAGACAAAAGCAGG
WS0289.B21_C03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0289_C03 5, mRNA sequence.
DR488125.1:274-293
AGTTCTTGTTCCTGGCACTGATGAAGAAGG274AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
EST1148743 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFY96 3' end, mRNA sequence.
DT633812.1:797-816
AGTTCTTGTTCCTGGCACTGATGAAAAAGG797AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
WS0366.C21_C22 SS-B-N-21 Picea sitchensis cDNA clone WS0366_C22 3', mRNA sequence.
ES247604.1:748-767
AGTTCTTGTTCCTGGCACTGATGAAGAAGG748AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
WS02760.CR_H10 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02760_H10 3', mRNA sequence.
ES853987.1:434-453
AGTTCTTGTTCCTGGCACTGATGAAGAAGG434AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
WS02789.CR_M16 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02789_M16 3', mRNA sequence.
ES863298.1:530-549
AGTTCTTGTTCCTGGCACTGATGAAGAAGG530AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
GQ03113.B7_K23 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03113_K23 5', mRNA sequence.
EX353764.1:796-815
AGTTCTTGTTCCTGGCACTGATGAAGAAAG796AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCT
GQ03222.B7_I18 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03222_I18 5', mRNA sequence.
EX371551.1:800-819
AGTTCTTGTTCCTGGCACTGATGAAGAAGG800AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
GQ03227.B7_G21 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03227_G21 5', mRNA sequence.
EX373315.1:796-815
AGTTCTTGTTCCTGGCACTGATGAAGAAGG796AGGAGGAGAGGTTATTAGTGGGGTTCCTGGTCTAGTTCCTGGTCTGACAA
GQ04105.B7_E19 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04105_E19 5', mRNA sequence.
EX442323.1:222-241
AGTTCTTGTTCCTGGCACTGATGAAGAAGG222AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
WS0461.C21_G23 SS-BD-31 Picea sitchensis cDNA clone WS0461_G23 5', mRNA sequence.
GH285294.1:801-820
AGTTCTTGTTCCTGGCACTGATGAAGAAGG801AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGAC
WS0461.CR_G23 SS-BD-31 Picea sitchensis cDNA clone WS0461_G23 3', mRNA sequence.
GH285668.1:19-38
TGGCACTGATGAAGAAGG19AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
GQ04003.B7P1_C08 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04003_C08 5', mRNA sequence.
GO369665.1:236-255
AGTTCTTGTTCCTGGCACTGATGAAGAAGG236AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
PBA0218.C21_E20 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0218_E20 5', mRNA sequence.
GW768141.1:707-726
AGTTCTTGTTCCTGGCACTGATGAAAAAGG707AGGAGGAGAGGTTATTAGTGGGGGTTCCTGTTCTAGTTCCTGGTCTGACA
Picea glauca clone GQ04003_C08 mRNA sequence.
BT118164.1:894-913
AGTTCTTGTTCCTGGCACTGATGAAGAAGG894AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
Picea sitchensis clone WS0289_C03 unknown mRNA.
EF084504.1:271-290
AGTTCTTGTTCCTGGCACTGATGAAGAAGG271AGGAGGAGAGGTTATTAGTGGGGTTCCTGTTCTAGTTCCTGGTCTGACAA
Ischnura elegans genome assembly, chromosome: 5.
OV121104.1:19749302-19749321
TTGTACATTTACCAATCAGGATGATCCCAA19749302AGGAGGAGAGGTTATTAGTGTACAGCCACGATAACTATTTCATCATTTAA
WS00725.B21_O05 WS-PS-N-A-8 Picea glauca cDNA clone WS00725_O05 3', mRNA sequence.
CO239486.1:795-814
TTGTCAGACCAGGAACTAGAACAGGAACCC795CACTAATAACCTCTCCTCCTCCTTCTTCATCAGTGCCAGGAACAAGAACT
WS0289.BR_C03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0289_C03 3, mRNA sequence.
DR482327.1:767-786
TTGTCAGACCAGGAACTAGAACAGGAACCC767CACTAATAACCTCTCCTCCTCCTTCTTCATCAGTGCCA
WS02713.CR_A08 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02713_A08 3, mRNA sequence.
DR505032.1:320-339
TTGTCAGACCAGGAACTAGAACAGGAACCC320CACTAATAACCTCTCCTCCTCCTTCTTCATCAGTGCCAGGAACAAGAACT
WS01034.B21_D13 SS-R-N-A-11 Picea sitchensis cDNA clone WS01034_D13 3, mRNA sequence.
DR540811.1:825-844
TTGTCAGACCAGGAACTAGAACAGGAACCC825CACTAATAACCTCTCCTCCTCCTTCTTCATCAGTGCCAGGAACAAGAACT
WS00746.C21_C04 WS-PS-N-A-8 Picea glauca cDNA clone WS00746_C04 3, mRNA sequence.
DR577390.1:795-814
TTGTCAGACCAGGAACTAGAACAGGAACCC795CACTAATAACCTCTCCTCCTCCTTCTTCATCAGTGCCAGGAACAAGAACT
WS03921.C21_H19 SS-B-24 Picea sitchensis cDNA clone WS03921_H19 3', mRNA sequence.
ES663553.1:759-778
TTGTCAGACCAGGAACTAGAACAGGAACCC759CACTAATAACCTCTCCTCCTCCTTCTTCATCAGTGCCAGGAACAAGAACT
PBA0218.CR_E20 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0218_E20 3', mRNA sequence.
GW768504.1:217-236
TTGTCAGACCAGGAACTAGAACAGGAACCC217CACTAATAACCTCTCCTCCTCCTTTTTCATCAGTGCCAGGAACAAGAACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGAGGAGAGGTTATTAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGAGGAGAGGTTATTAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.012 | 1.004 | search_plus_done; http://172.18.8.135:50400/match?q=AGGAGGAGAGGTTATTAGTG&k=0&no_gap=0&offset=0&limit=50
1.422 | 0.409 | search_minus_done; http://172.18.8.135:50400/match?q=CACTAATAACCTCTCCTCCT&k=0&no_gap=0&offset=0&limit=33
1.427 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).