GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:16:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

100a01w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960340.1:145-164
CGTGGTGCACCGTGTCCAACGTCCTGAACA145AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
115d03 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961265.1:145-164
CGTGGTGCACCGTGTCCAACGTCCTGAACA145AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
115e01w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961275.1:145-164
CGTGGTGCACCGTGTCCAACGTCCTGAACA145AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
EX20LIB3_UP_009_G02_04FEB2004_004 Brassica napus EX20LIB3 Brassica napus cDNA 5', mRNA sequence.
EE489787.1:143-162
CGTGGTGCACCGTGTCCAACGTCCTGAACA143AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
RS1CE28JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893002.1:343-362
CGTGGTGGACAGTGTCCAACGTCCTGAACA343AGGAGTGGAAAGGAGTGTCGTAACGTCCGTCGCATAGATCGATACCTCCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2030.
FX727786.1:704-723
CGTGGTGCACCGTGTCCAACGTCCTGAACA704AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
TSA: Raphanus sativus RS21066 mRNA sequence.
JT805613.1:1503-1522
CGTGGTGGACAGTGTCCAACGTCCTGAACA1503AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCGATACCTCCG
ode10h05.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH934143.1:97-116
CGTGGTGGACAGTGTCCAACGTCCTGAACA97AGGAGTGGAAAGGAGTGTCGTAACGTCCATCACAGAGATCGATCCCACCA
odf64d04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH939494.1:300-319
CGTGGTGCACCGTGTCCAACGTCCTGAACA300AGGAGTGGAAAGGAGTGTCGTAACGTCCGTCGCAGAGATCAATACCTCCG
Brassica napus GSS, clone JBnB155J19, end read, primer SACR2(reverse).
FP064736.1:523-542
CGTGGTGCACCGTGTCCAACGTCCTGAACA523AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089M05, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189514.2:80613-80632
CGTGGTGCACCGTGTCCAACGTCCTGAACA80613AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:39874658-39874677
CGTGGTGCACCGTGTCCAACGTCCTGAACA39874658AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:26765339-26765358
CGTGGTGCACCGTGTCCAACGTCCTGAACA26765339AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44933077-44933096
CGTGGTGGACAGTGTCCAACGTCCTGAACA44933077AGGAGTGGAAAGGAGTGTCGTAACGTCCGTCGCAGAGATCAATACCTCCG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:47197422-47197441
CGTGGTGGACAGTGTCCAACGTCCTGAACA47197422AGGAGTGGAAAGGAGTGTCGTAACGTCCATCACAGAGATCGATCCCACCA
Brassica rapa genome, scaffold: A01.
LR031571.1:31707130-31707149
CGTGGTGCACCGTGTCCAACGTCCTGAACA31707130AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:46035925-46035944
CGTGGTGGACAGTGTCCAACGTCCTGAACA46035925AGGAGTGGAAAGGAGTGTCGTAACGTCCATCACAGAGATCGATCCCACCA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:43940369-43940388
CGTGGTGCACCGTGTCCAACGTCCTGAACA43940369AGGAGTGGAAAGGAGTGTCGTAACGTCCGTCGCAGAGATCAATACCTCCG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:32239459-32239478
CGTGGTGCACCGTGTCCAACGTCCTGAACA32239459AGGAGTGGAAAGGAGTGTCGTAACGTCCATCGCATAGATCAATACCTCCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a014E08_T7.
AM390855.1:413-432
TGGTGGGATCGATCTCTGTGATGGACGTTA413CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
BN25.066K21F020122 BN25 Brassica napus cDNA clone BN25066K21, mRNA sequence.
CD827204.1:196-215
CGGAGGTATTGATCTCTGCGACGGACGTTA196CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica oleracea var. viridis mRNA, clone: KALE-108A17, 5' end sequence.
DK496874.1:156-175
CGGAGGTATTGATCTCTGCGACGGACGTTA156CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
110c02w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960789.1:666-685
CGGAGGTATTGATCTATGCGATGGACGTTA666CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGGACACGGTTGCACCA
48RDOAM_UP_038_G06_14SEP2004_036 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY019105.1:340-359
TGGTGGGATCGATCTCTGTGATGGACGTTA340CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
59ACAB6_UP_012_A05_23JUL2004_047 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE420518.1:18-37
CTCTGTGATGGACGTTA18CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
OL1926R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1926, mRNA sequence.
EH415586.1:170-189
TGGTGGGATCGATCTCTGTGATGGACGTTA170CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
0131889 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV126577.1:146-165
TGGTGGGATCGATCTCTGTGATGGACGTTA146CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
0079885 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156023.1:540-559
TGGTGGGATCGATCTCTGTGATGGACGTTA540CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
0103527 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV202374.1:296-315
CGGAGGTATTGATCTATGCGATGGACGTTA296CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
0179681 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV209472.1:279-298
CGGAGGTATTGATCTCTGCGACGGACGTTA279CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
BR045435 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-083H12 5', mRNA sequence.
EX060791.1:210-229
CGGAGGTATTGATCTATGCGATGGACGTTA210CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
BR062018 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-006B08 5', mRNA sequence.
EX077374.1:216-235
CGGAGGTATTGATCTATGCGATGGACGTTA216CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
BR066260 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-065C05 5', mRNA sequence.
EX081616.1:171-190
CGGAGGTATTGATCTATGCGATGGACGTTA171CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
BR121498 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-87F04 5', mRNA sequence.
EX137668.1:301-320
CGGAGGTATTGATCTATGCGATGGACGTTA301CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
BN18DYSC_UP_139_D03_3APR2008_025 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG564691.1:21-40
GATCTATGCGATGGACGTTA21CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
BNAOV1GH_T3_026_H02_12JULY2007_002 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR441960.1:239-258
TGGTGGGATCGATCTCTGTGATGGACGTTA239CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3419.
FX693115.1:992-1011
CGGAGGTATTGATCTATGCGATGGACGTTA992CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
JBnY027K15F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY027K15, genomic survey sequence.
DU101201.1:506-525
TGGTGGGATCGATCTCTGTGATGGACGTTA506CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica oleracea phospholipase D2 (PLD2) mRNA, complete cds.
AF090444.1:1163-1182
CGGAGGTATTGATCTCTGCGACGGACGTTA1163CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
Brassica oleracea phospholipase D1 (PLD1) mRNA, complete cds.
AF090445.1:1184-1203
TGGTGGGATCGATCTCTGTGATGGACGTTA1184CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica oleracea var. capitata phospholipase D1 (PLD1) gene, complete cds.
AF113918.1:1668-1687
TGGTGGGATCGATCTCTGTGATGGACGTTA1668CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica oleracea var. capitata phospholipase D2 (PLD2) gene, complete cds.
AF113919.1:1655-1674
CGGAGGTATTGATCTCTGCGACGGACGTTA1655CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:9290266-9290285
TGGTGGGATCGATCTCTGTGATGGACGTTA9290266CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8443780-8443799
CGGAGGTATTGATCTCTGCGACGGACGTTA8443780CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica napus phospholipase D1 (PLD1) mRNA, complete cds.
KC292493.1:1101-1120
TGGTGGGATCGATCTCTGTGATGGACGTTA1101CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica napus phospholipase D2 (PLD2) mRNA, complete cds.
KC292494.1:1107-1126
CGGAGGTATTGATCTATGCGATGGACGTTA1107CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
Brassica napus phospholipase D3 (PLD3) mRNA, complete cds.
KF113586.1:1101-1120
TGGTGGGATCGATCTCTGTGATGGACGTTA1101CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Brassica napus phospholipase D4 (PLD4) mRNA, complete cds.
KF113587.1:1107-1126
CGGAGGTATTGATCTATGCGATGGACGTTA1107CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG
Brassica napus cultivar Westar phospholipase D1 mRNA, partial cds.
KJ755984.1:1101-1120
TGGTGGGATCGATCTCTGTGATGGACGTTA1101CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACTGTCCACCACG
Barbarea vulgaris genome assembly, chromosome: 7.
OY763893.1:5841049-5841068
TGGCGGTATTGATCTCTGTGATGGAAGATA5841049CGACACTCCTTTCCACTCCTTGTTCAGGACATTGGACACAGTTCACCATG
Brassica oleracea var. capitata phospholipase D mRNA, complete cds.
U85482.1:1212-1231
CGGAGGTATTGATCTCTGCGACGGACGTTA1212CGACACTCCTTTCCACTCCTTGTTCAGGACGTTGGACACGGTGCACCACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGAGTGGAAAGGAGTGTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGAGTGGAAAGGAGTGTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.520 | 0.511 | search_plus_done; http://172.18.8.135:50400/match?q=AGGAGTGGAAAGGAGTGTCG&k=0&no_gap=0&offset=0&limit=50
1.730 | 1.210 | search_minus_done; http://172.18.8.135:50400/match?q=CGACACTCCTTTCCACTCCT&k=0&no_gap=0&offset=0&limit=31
1.751 | 0.021 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).