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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:47:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Argentina silus genome assembly, chromosome: 17.
OX637384.1:3426361-3426380
ACAGCCTGGAGCCAGGCCCTGAGAAGACCC3426361AGGATAAGAAGAAGAAAAGCTCTGGCCTGGCCACACTCAAGAGACGCTTC
601078221F1 NIH_MGC_12 Homo sapiens cDNA clone IMAGE:3464141 5', mRNA sequence.
BE544551.1:375-394
TGGGTTCAGATGAGGAGGATGACAGCGGTA375AGGATAAGAAGAAGAAAAGCTAAGAAGATCAAAGAGAACATACATTGATC
601560917F1 NIH_MGC_20 Homo sapiens cDNA clone IMAGE:3830308 5', mRNA sequence.
BE727248.1:34-53
TGGGTTCAGATGAGGAGGATGACAGCGGTA34AGGATAAGAAGAAGAAAAGCTAAGAAGATCAAAGAGAAATACATTGATCA
37RDBRH_UP_065_H11_05DEC2005_081 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE527033.1:257-276
CAGCAGAGAAGAGTGAGAAGAAGAAAAAGA257AGGATAAGAAGAAGAAAAGCAAAGACAGCCCTGCCCCTGTGTCAACGAAG
BNSCS4CT_UP_063_B11_18MAY2007_093 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV063113.1:214-233
CAGCAGAGAAGAGTGAGAAGAAGAAAAAGA214AGGATAAGAAGAAGAAAAGCAAAGACAGCGATGACGAATAATGAGATGGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_246.
FX702596.1:1739-1758
CAGCAGAGAAGAGTGAGAAGAAGAAAAAGA1739AGGATAAGAAGAAGAAAAGCAAAGACAGCGATGACGAATAATGAGATGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11594.
FX737634.1:1701-1720
CAGCAGAGAAGAGTGAGAAGAAGAAAAAGA1701AGGATAAGAAGAAGAAAAGCAAAGACAGCGATGACGAATAATGAGATGGG
KBrH044H04F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH044H04, genomic survey sequence.
DX908630.1:542-561
CAGCAGAGAAGAGTGAGAAGAAGAAAAAGA542AGGATAAGAAGAAGAAAAGCAAAGACAGCGATGACGAATAATGAGATGGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrB019G20, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.
AC234713.2:112496-112515
CAGCAGAGAAGAGTGAGAAGAAGAAAAAGA112496AGGATAAGAAGAAGAAAAGCAAAGACAGCGATGACGAATAATGAGATGGG
Daucus carota isolate Kuroda chromosome 2.
CP125302.1:19734755-19734774
TCATGGTTAAAACATGCACTGCCAGATTGC19734755AGGATAAGAAGAAGAAAAGCTTGTTTGGAAGCCTTCGAACAAGTCTGTAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828279.1:172879650-172879669
AGGAGGAGGAGGAGGAGAAGGAGAAGGAAG172879650AGGATAAGAAGAAGAAAAGCAGAAGGAGAAGGAGAAGGAGGAAGAAGGAG
Triticum aestivum genome assembly, chromosome: 7B.
LR865498.1:420411850-420411869
CCATTGAATCAGAAGATGAAGCTGCTGCTC420411850AGGATAAGAAGAAGAAAAGCGCCAGAACCACTACTGCCCAGGTTCTTGGA
Allium cepa genome assembly, chromosome: 3.
LR994631.1:123611423-123611442
AATTTTAAAAGAGGTAGGCCATCACTAACA123611423AGGATAAGAAGAAGAAAAGCTAGGAATAAGCTTAAGTAAGTCAAATCTAT
Cenchrus americanus genome assembly, chromosome: PMC23DB2.
OX387240.1:255204658-255204677
TGCAAACGAAATCGATCGATGGAGGCAAGA255204658AGGATAAGAAGAAGAAAAGCGAAAGCCAGCAAATTATTCACCGGTGGAGC
Hordeum vulgare genome assembly, chromosome: 7H.
OX638790.1:172271673-172271692
AGGAGGAGGAGGAGGAGAAGGAGAAGGAAG172271673AGGATAAGAAGAAGAAAAGCAGAAGGAGAAGGAGAAGGAGGAAGAAGGAG
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737656.1:289935800-289935819
AGGAGAAGGAGGAGGAGAAGGAGAAGGAAG289935800AGGATAAGAAGAAGAAAAGCAGAAGGACAAGAAGAAGGAGAAGGAGCTTC
Cochlearia excelsa genome assembly, chromosome: 3.
OY748329.1:3608973-3608992
CCGCTGCTGAATGGGATGCGAGGATTAGTA3608973AGGATAAGAAGAAGAAAAGCCATAAGAAGAAGAAGATGATGAAGAAGAAG
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:892598004-892598023
AGCGAGAACCCCAATTTAAACACCCACACT892598004AGGATAAGAAGAAGAAAAGCATAAGAAGCCATAAGGAAACAATAGTAACA
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:571996197-571996216
GTAAGCATCCCAATTTAAACACCCTACACT571996197AGGATAAGAAGAAGAAAAGCAAGGCAGTCAAAAGGAAACAACAGTGGCAC
Alisma plantago-aquatica genome assembly, chromosome: 7.
OY856415.1:37459935-37459954
GGGAGAATCCCAATTTAAACATCCCACACT37459935AGGATAAGAAGAAGAAAAGCAGGGGAAGTCAAAAGGAAATAATCAGTAGC
Brucella intermedia strain DW0551 chromosome 2.
CP131475.1:486920-486939
TCAAGGATTTCCCCGCAGACGGTGCCGGCA486920AGGATAAGAAGAAGAAAAGCGGCAGCAAAACCCACGCCAAAACCGCTGAC
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Principal Pseudohaplotype.
AP027110.1:32337754-32337773
GTATCGTGAAAAAAATCACATCAATTTCTA32337754AGGATAAGAAGAAGAAAAGCATACAATTCAACTGCACATAATAATGTTAA
Aelia acuminata genome assembly, chromosome: 1.
OU426978.1:228435796-228435815
CGGTGGGTAATACTATTCTGTAGAGAAAAC228435796AGGATAAGAAGAAGAAAAGCAAATGACTTTAAAAAAAAAAGGTGCGAAAA
Tridacna gigas genome assembly, chromosome: 15.
OX244042.2:47160403-47160422
GTAGAGACACAAGTAGTAGTCCAGAGCGCA47160403AGGATAAGAAGAAGAAAAGCAAGAAACACCGACATGAACGGTATGTGACG
Lacanobia wlatinum genome assembly, chromosome: 22.
OX388044.1:10274444-10274463
TGTGTGGGGTCGTTAGACCTTGCTGCCCAC10274444AGGATAAGAAGAAGAAAAGCCCCAAAGTCATAGAACTTAAAAAATGACAG
Dircenna loreta genome assembly, chromosome: 9.
OY743096.1:10554653-10554672
TCGTTAGCGATTCAGAAAAGAAAAAGAAGA10554653AGGATAAGAAGAAGAAAAGCAAGAGGAAGAAGAGCAGCAGCAGCAGCTCC
Tachinus rufipes genome assembly, chromosome: 3.
OZ010743.1:112049026-112049045
GTTCAGAAGTGACAATAATGAGCTAAAAGA112049026AGGATAAGAAGAAGAAAAGCAAAATAGTCAATCGGTAACTGACTACACGG
Bos taurus genome assembly, chromosome: 14.
LR962744.1:16362862-16362881
GACTCCCAGGGGCACTGAGCACAGTTAACT16362862GCTTTTCTTCTTCTTATCCTGCCTTCCTAGACACCACATTCTTCCAGTTT
Bos taurus genome assembly, chromosome: 14.
LR962869.1:16137006-16137025
GACTCCCAGGGGCACTGAGCACAGTTAACT16137006GCTTTTCTTCTTCTTATCCTGCCTTCCTAGACACCACATTCTTCCAGTTT
Bos gaurus x Bos taurus genome assembly, chromosome: 14.
OX258968.1:17965698-17965717
GACTCCCAGGGGCACTGAGCACAGTTAACT17965698GCTTTTCTTCTTCTTATCCTGCCTTCCTAGACACCACATTCTTCCAGTTT
Bos taurus strain mammals genome assembly, chromosome: 14.
OX344703.1:19615549-19615568
GACTCCCAGGGGCACTGAGCACAGTTAACT19615549GCTTTTCTTCTTCTTATCCTGCCTTCCTAGACACCACATTCTTCCAGTTT
Bos taurus genome assembly, chromosome: Bta14.
OY997242.1:20566601-20566620
GACTCCCAGGGGCACTGAGCACAGTTAACT20566601GCTTTTCTTCTTCTTATCCTGCCTTCCTAGACACCACATTCTTCCAGTTT
Barbus barbus genome assembly, chromosome: 20.
OW387187.1:3828173-3828192
TGTATATTATAGTTGGCTCTTTAAAGAATT3828173GCTTTTCTTCTTCTTATCCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCT
OXAX-aaa43e06.g1 Oxytricha_pSMART_OXAX Sterkiella histriomuscorum cDNA, mRNA sequence.
GD172135.1:142-161
TTTCTTACTGCTTTTCTTGTCATTTTTCTT142GCTTTTCTTCTTCTTATCCTTTTTGCCTTTCTTCAACCCCAACTCCACTT
GC_Bc109P16.R GC_Bc Glycine canescens genomic 3', genomic survey sequence.
JS024774.1:837-856
TTGGTTTCTGAAATTGATGATGGTTTGATT837GCTTTTCTTCTTCTTATCCTCTAAAAATGGTGCAAGCACATACAAA
Bos taurus clone CH240-388F15, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC221689.1:93902-93921
GACTCCCAGGGGCACTGAGCACAGTTAACT93902GCTTTTCTTCTTCTTATCCTGCCTTCCTAGACACCACATTCTTCCAGTTT
Pyrenophora teres f. maculata isolate P-A14 chromosome 8.
CP060573.1:2297138-2297157
AAGTAGAGGTAGTTCTATAATTCTATAATA2297138GCTTTTCTTCTTCTTATCCTACTAGTTACGGTAATACTAATAGGTACTTT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:18482910-18482929
CCCATCTCATTATTCGTCATCGCTGTCTTT18482910GCTTTTCTTCTTCTTATCCTTCTTTTTCTTCTTCTCACTCTTCTCTGCTG
Corylus americana cultivar Rush chromosome 1.
CP125814.1:21693747-21693766
CTTCGACTGCAATCCTACTGTCTCTGCATA21693747GCTTTTCTTCTTCTTATCCTCGTTATCTCCCTTTCCTCCCCTAAACTCTC
Sorghum bicolor cultivar Hongyingzi chromosome 3.
CP137827.1:74848987-74849006
ATTCACCTTTGAAAGCCTCTTCTTCTCCTT74848987GCTTTTCTTCTTCTTATCCTTCTTTCTATCTTTTTTTGTAAAGGGCTGAC
Sorghum bicolor cultivar Huandiaonuo chromosome 3.
CP137837.1:75223057-75223076
ATTCACCTTTGAAAGCCTCTTCTTCTCCTT75223057GCTTTTCTTCTTCTTATCCTTCTTTCTATCTTTTTTTGTAAAGGGCTGAC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:18369231-18369250
CCCATCTCATTATTCGTCATCGCTGTCTTT18369231GCTTTTCTTCTTCTTATCCTTCTTTTTCTTCTTCTCACTCTTCTCTGCTG
Brassica rapa genome, scaffold: A02.
LR031573.1:17775364-17775383
CCCATCTCATTATTCGTCATCGCTGTCTTT17775364GCTTTTCTTCTTCTTATCCTTCTTTTTCTTCTTCTCACTCTTCTCTGCTG
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:17846754-17846773
CCCATCTCATTATTCGTCATCGCTGTCTTT17846754GCTTTTCTTCTTCTTATCCTTCTTTTTCTTCTTCTCACTCTTCTCTGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460027.1:140667583-140667602
TCTCTTCTTCTTTTCTTCTTCTTTTCTTCT140667583GCTTTTCTTCTTCTTATCCTCCTCCTTCTCCTTCTCCTTCTTCTTTTTGT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638799.1:268789421-268789440
TTCTTCTTCCTCCTTCTCCTTCTCCCTTCT268789421GCTTTTCTTCTTCTTATCCTCTTCATTCTCCTTCTCCTTCTCCTCCTCCT
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:1067710797-1067710816
GCTACTGATTGTTTCCTTCTGGCTTCCTCT1067710797GCTTTTCTTCTTCTTATCCTAGTGTGGGGTGTTTAAATTGGGATTCTTGT
Aelia acuminata genome assembly, chromosome: X.
OU426980.1:62089795-62089814
TTCGCACTTTTTTTTTTTTTAAAGTCATTT62089795GCTTTTCTTCTTCTTATCCTGTTTTCTGTACAGAATAGTTTTACCCACCG
Marthasterias glacialis genome assembly, chromosome: 17.
OU452235.1:3125136-3125155
AATAACAACCACTGGAGAGTCGTGCCTGAA3125136GCTTTTCTTCTTCTTATCCTGGTTGCCAAACAAAAACTAAAACAATATTA
Marthasterias glacialis genome assembly, chromosome: 17.
OU452235.1:3140671-3140690
AATAACAACCACTGGAGAGTCGTGCCTGAA3140671GCTTTTCTTCTTCTTATCCTGGTTGGCAAAAGAACTACAAATTTATCACT
Volucella inflata genome assembly, chromosome: 1.
OV743716.1:191890891-191890910
ATCATTCCAGAGCCTCTCTCACATCTCTAT191890891GCTTTTCTTCTTCTTATCCTTTTATTAACCCTTTCTTCGTTATACGAACT
Cheilosia pagana genome assembly, chromosome: 3.
OW386168.1:3761037-3761056
TCAAGAGTTTTTCAGGTCTGTCGTTCACTA3761037GCTTTTCTTCTTCTTATCCTATATTTAAATCAGAGAACGGAATGAAGACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGATAAGAAGAAGAAAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGATAAGAAGAAGAAAAGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.403 | 0.395 | search_plus_done; http://172.18.8.135:50400/match?q=AGGATAAGAAGAAGAAAAGC&k=0&no_gap=0&offset=0&limit=50
0.696 | 0.293 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTTTCTTCTTCTTATCCT&k=0&no_gap=0&offset=0&limit=23
0.712 | 0.016 | cgi_end;

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