GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:58:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54043241-54043260
AAAAAAAATCAAATGTCTACTCTCAATTTA54043241AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:13389024-13389043
AAAAAAATTCAAATGTCTACTCTTAATTTA13389024AGGATATCAGGTCAAACAGCGCGGTTGCATACCTTGAGCAGACAAGTTTG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39089847-39089866
AAAAAAAATCAAATGTCTACTCTCAATTTA39089847AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica rapa genome, scaffold: A06.
LR031569.1:49149199-49149218
AAAAAAAATCAAATGTCTACTCTCAATTTA49149199AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:52765599-52765618
AAAAAAAATCAAATGTCTACTCTCAATTTA52765599AGGATATCAGGTCAAACAGCGCAGTTGCATACCTTGAGCAGACAAGTTTG
Brassica rapa subsp. pekinensis clone KBrH106B05, complete sequence.
CU915253.1:50959-50978
CAAACTTGTCTGCTCAAGGTATGCAACTGC50959GCTGTTTGACCTGATATCCTTAAATTGAGAGTAGACATTTGATTTTTTTT
Brassica rapa subsp. pekinensis clone KBrH020I11, complete sequence.
CU984558.1:52315-52334
CAAACTTGTCTGCTCAAGGTATGCAACTGC52315GCTGTTTGACCTGATATCCTTAAATTGAGAGTAGACATTTGATTTTTTTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:42428363-42428382
CAAACTTGTCTGCTCAAGGTATGCAACCGC42428363GCTGTTTGACCTGATATCCTTAAATTAAGAGTAGACATTTGAATTTTTTT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:45329419-45329438
CAAACTTGTCTGCTCAAGGTATGCAACCGC45329419GCTGTTTGACCTGATATCCTTAAATTAAGAGTAGACATTTGAATTTTTTT
Nasturtium officinale genome assembly, chromosome: 8.
OY978506.1:7124375-7124394
CAAACTTGTCTGCTCAAGGTATGCAACTGG7124375GCTGTTTGACCTGATATCCTTATATAATGATAGTAGACATTTGAAAAAAA
Cardamine chenopodiifolia genome assembly, chromosome: 6.
OZ000464.1:10068810-10068829
CAAACTTGTCTGCTCAAGGTATGCAACTCG10068810GCTGTTTGACCTGATATCCTTAAATAATGACTAGTAGACATTTGAAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AGGATATCAGGTCAAACAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGATATCAGGTCAAACAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=AGGATATCAGGTCAAACAGC&k=0&no_gap=0&offset=0&limit=50
0.142 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGTTTGACCTGATATCCT&k=0&no_gap=0&offset=0&limit=45
0.146 | 0.004 | cgi_end;

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