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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:07:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sus scrofa scrofa breed NS chromosome 10.
CP071561.1:67443466-67443485
CTTCTCTCTTGCCCCGAGCCGCGAGATGAT67443466AGGATGAAGAAGCCATGGAAACAGAAAACTAAAATTGGGCACATGTGATC
Sus scrofa genome assembly, chromosome: 10.
OY997217.1:84393452-84393471
CTTCTCTCTTGCCCCGAGCCGCGAGATGAT84393452AGGATGAAGAAGCCATGGAAACAGAAAACTAAAATTGGGCACATGTGATC
Pholis gunnellus genome assembly, chromosome: 23.
OU342826.1:12027148-12027167
AGGGAAGGAATGGGGGGAGAGGTCAACTGC12027148AGGATGAAGAAGCCATGGAAAGTGAAATAAGCAAGAGCACCACCCATTAA
Melanostigma gelatinosum genome assembly, chromosome: 23.
OX456520.1:11954121-11954140
CAGGAACAGAATAGGGGGAGAGGTCACTAC11954121AGGATGAAGAAGCCATGGAAAGTGAAATAAGCAAGAGCACCACCTGTTAA
Trifolium pratense DNA, clone:RC0335f.ab1.
DE245206.1:37-56
TTTTTAGATATACTGTACTCACAGCTTCAG37AGGATGAAGAAGCCATGGAATGGTAATTTGTTTTTTTGGTTAATAGATTC
Solanum tuberosum strain Diploid genotype RH89-039-16 chromosome 9 clone RH075J01, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
AC235632.1:121447-121466
TTGACTCTCCCACAACCAAGGGATGCGGAG121447AGGATGAAGAAGCCATGGAAGGTTTACATCGCCATTCAAGTCTCCCTAGT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-75D11.
FP016185.4:192705-192724
CTTCTCTCTTGCCCCGAGCCGCGAGATGAT192705AGGATGAAGAAGCCATGGAAACAGAAAACTAAAATTGGGCACATGTGATC
Solanum tuberosum cultivar Solyntus chromosome 9.
CP055242.1:25865048-25865067
TTGACTCTCCCACAACCAAGGGATGCGGAG25865048AGGATGAAGAAGCCATGGAAGGTTTACATCGCCATTCAAGTCTCCCTAGT
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:48633784-48633803
TTTTCAGATCCACTCTAGTCACAGCTTGAG48633784AGGATGAAGAAGCCATGGAATAGTAGTATCTATTTTTGTTTATTTTTTTT
Avena sativa genome assembly, chromosome: 5A.
OU342382.1:147302169-147302188
CTTCGCCAGAGCAGCCTTCCCCATACATAG147302169AGGATGAAGAAGCCATGGAACTACCTCTTCCCACATGGGAACCAATCCTA
Avena atlantica genome assembly, chromosome: 5A.
OU342737.1:202561315-202561334
CTTCGCCTGAGCAGCCTTCCCCATACATAG202561315AGGATGAAGAAGCCATGGAACTACCTCTTCCCACATGGGAACCAATCCTA
Avena longiglumis genome assembly, chromosome: 5A.
OU342751.1:209790798-209790817
CTTCGCCTGAGCAGCCTTCCCCATACATAG209790798AGGATGAAGAAGCCATGGAACTACCGCTTCCCACATGGGAACCAATCCTA
Avena sativa genome assembly, chromosome: 5.
OV702283.1:143765356-143765375
CTTCGCCAGAGCAGCCTTCCCCATACATAG143765356AGGATGAAGAAGCCATGGAACTACCTCTTCCCACATGGGAACCAATCCTA
Galeopsis tetrahit genome assembly, chromosome: 12.
OY776130.1:74541227-74541246
CCTCGGGCCTCAACCATCGCTTGAGAGTGG74541227AGGATGAAGAAGCCATGGAATCTCTGTTGAGTGACGCTACGCACGATTTC
Solanum tuberosum strain Diploid genotype RH89-039-16 chromosome 9 clone RH066E20, *** SEQUENCING IN PROGRESS ***, 55 unordered pieces.
AC235629.1:194125-194144
ACTAGGGAGACTTGAATGGCGATGTAAACC194125TTCCATGGCTTCTTCATCCTCTCCGCATCCCTTGGTTGTGGGAGAGTCAA
Solanum tuberosum strain Diploid genotype RH89-039-16 chromosome 9 clone RH070H13, *** SEQUENCING IN PROGRESS ***, 40 unordered pieces.
AC239311.1:36193-36212
ACTAGGGAGACTTGAATGGCGATGTAAACC36193TTCCATGGCTTCTTCATCCTCTCCGCATCCCTTGGTTGTGGGAGAGTCAA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-134E10.
FP016037.4:165615-165634
GATCACATGTGCCCAATTTTAGTTTTCTGT165615TTCCATGGCTTCTTCATCCTATCATCTCGCGGCTCGGGGCAAGAGAGAAG
Solanum tuberosum cultivar P8 chromosome 9.
CP046687.1:44874993-44875012
CTRGGGWGACTTGAMTGGCGATGTANAACC44874993TTCCATGGCTTCTTCATCCTCTCCSCATCCCTTGGTTGTGGGAGASTCAA
Solanum tuberosum cultivar MSH/14-112 chromosome 9.
CP046693.1:44887815-44887834
CTAGGGAGACTTGAATGGCGATGTAGAACC44887815TTCCATGGCTTCTTCATCCTCTCCGCATCCCTTGGTTGTGGGAGAGTCAA
Solanum pinnatisectum cultivar CGN17745 chromosome 9.
CP047560.1:44872611-44872630
CTAGGGTGACTTGACTGGCGATGTAGAACC44872611TTCCATGGCTTCTTCATCCTCTCCCCATCCCTTGGTTGTGGGAGACTCAA
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:4396572-4396591
CAATCTATGAACCAAAAAGTACCATTCCAT4396572TTCCATGGCTTCTTCATCCTCTCAAGCTGCGACTACAGTAGATCTGAAAA
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:5267499-5267518
AATCAATCTAAAAACTAAAAACAGATATCA5267499TTCCATGGCTTCTTCATCCTCTCCAGCTGTGACTAGAGTAGATTTGAAAA
Tridacna crocea genome assembly, chromosome: 2.
OX031057.1:25005708-25005727
CCTGGGCTTTTTCGTTCCAAAACCAATTCG25005708TTCCATGGCTTCTTCATCCTATGGTTGTGCGCTACTCCATTCGATTGCTC
Tridacna crocea genome assembly, chromosome: 9.
OX031064.1:32629965-32629984
CCATGGCTTTTTCATTCTAAAACATGTTTG32629965TTCCATGGCTTCTTCATCCTTTGATTGTATGCTATTCCAAATGTTTGGGC
Zelleria hepariella genome assembly, chromosome: 7.
OX439385.1:6546945-6546964
AGAATAATTGTAGATTGAAACCCAGAATAG6546945TTCCATGGCTTCTTCATCCTAATATCCCTGGCACTACAGCGTCCGAATTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGATGAAGAAGCCATGGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGATGAAGAAGCCATGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.210 | 0.202 | search_plus_done; http://172.18.8.135:50400/match?q=AGGATGAAGAAGCCATGGAA&k=0&no_gap=0&offset=0&limit=50
0.318 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCATGGCTTCTTCATCCT&k=0&no_gap=0&offset=0&limit=36
0.326 | 0.007 | cgi_end;

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