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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 08:52:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-008C17, 3' end sequence.
DK518303.1:666-690
AAGAAGAGTCAACCTCAAATGGTTTTAGCT666AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-060L15, 3' end sequence.
DK538357.1:684-708
AAGAAGAGTCAACCTCAAATGGTTTTAGCT684AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-148K11, 3' end sequence.
DK571958.1:555-579
AAGAAGAGTCAACCTCAAATGGTTTTAGCT555AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
13862079 CERES-CL13 Zea mays cDNA clone 1383078 3', mRNA sequence.
FL446382.1:380-404
AAGAAGAGTCAACCTCAAATGGTTTTAGCT380AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
24488494 CERES-CL13 Zea mays cDNA clone 1383078 3', mRNA sequence.
FL446383.1:465-489
AAGAAGAGTCAACCTCAAATGGTTTTAGCT465AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12657.
FX670728.1:1379-1403
AGAAGAGTCAACCTCAAAATGGTTTTAGCT1379AGGCATGTATGGAGATGTAGAGTGATTGATTCTCTCCATTAGAACATCATCGTCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023N08, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC189273.2:151371-151395
AAGAAGAGTCAACCTCAAATGGTTTTAGCT151371AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:3730937-3730961
AAGAAGAGTCAACCTCAAATGGTTTTAGCT3730937AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.
EU953106.1:1185-1209
AAGAAGAGTCAACCTCAAATGGTTTTAGCT1185AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:22280607-22280631
AAGAAGAGTCAACCTCAAATGGTTTTAGCT22280607AGGCATGTATGGAGATGTAGAGTGATTTGATTATCCATTAGAACATCATCTTCCT
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:4134347-4134371
AGAAGAGTCAACCTCAAAATGGTTTTAGCT4134347AGGCATGTATGGAGATGTAGAGTGATTGATTCTCTCCATTAGAACATCATCGTCC
RS3AO23JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737410.1:61-85
GGACGATGATGTTCTAATGGAGAGAATCAA61TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTGAGGTTGACTCTTCTT
TSA: Raphanus sativus RS26749 mRNA sequence.
JT811296.1:128-152
GGACGATGATGTTCTAATGGAGAGAATCAA128TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTGAGGTTGACTCTTCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
AC189271.2:36743-36767
AGGAAGATGATGTTCTAATGGATAATCAAA36743TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTGAGGTTGACTCTTCTT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:19481198-19481222
AGGAAGATGATGTTCTAATGGATAATCAAA19481198TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTGAGGTTGACTCTTCTT
Brassica rapa genome, scaffold: A08.
LR031575.1:21377924-21377948
AGGAAGATGATGTTCTAATGGATAATCAAA21377924TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTGAGGTTGACTCTTCTT
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:24759930-24759954
GGACGATGATGTTCTAATGGAGAGAATCAA24759930TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTTGAGGTTGACTCTTCT
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:27163769-27163793
AGGAAGATGATGTTCTAATGGATAATCAAA27163769TCACTCTACATCTCCATACATGCCTAGCTAAAACCATTTGAGGTTGACTCTTCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGCATGTATGGAGATGTAGAGTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGCATGTATGGAGATGTAGAGTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.843 | 0.834 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCATGTATGGAGATGTAGAGTGA&k=0&no_gap=0&offset=0&limit=50
1.052 | 0.210 | search_minus_done; http://172.18.8.135:50400/match?q=TCACTCTACATCTCCATACATGCCT&k=0&no_gap=0&offset=0&limit=39
1.057 | 0.005 | cgi_end;

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