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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:40:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BN25.060J08F011129 BN25 Brassica napus cDNA clone BN25060J08, mRNA sequence.
CD825375.1:311-329
CATGTGAAGATACTTGCTTTTGCCTCATCA311AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
BN45.046E15F011229 BN45 Brassica napus cDNA clone BN45046E15, mRNA sequence.
CD835671.1:81-99
CATGTGAAGATACTTGCTTTTGCCTCATCA81AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
16ACDHDS_UP_007_H07_08APR2004_049 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
CX280286.1:11-29
GGCCTCATCA11AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-020M09, 5' end sequence.
DK463489.1:198-216
CATGTGAAGATACTTGCTTTTGCCTCATCA198AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-075L11, 5' end sequence.
DK484500.1:390-408
CATGTGAAGATACTTGCTTTTGCCTCATCA390AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-092I17, 5' end sequence.
DK490941.1:198-216
CATGTGAAGATACTTGCTTTTGCCTCATCA198AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-106G08, 5' end sequence.
DK496242.1:198-216
CATGTGAAGATACTTGCTTTTGCCTCATCA198AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-115P01, 5' end sequence.
DK499883.1:198-216
CATGTGAAGATACTTGCTTTTGCCTCATCA198AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-142H21, 5' end sequence.
DK510035.1:198-216
CATGTGAAGATACTTGCTTTTGCCTCATCA198AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea var. viridis mRNA, clone: KALE-156B23, 5' end sequence.
DK515245.1:384-402
CATGTGAAGATACTTGCTTTTGCCTCATCA384AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
BMSA01-T7-12-H01 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG020780.1:212-230
CATGTGAAGATACTTGCTTTTGCCTCATCA212AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
0082406 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV158544.1:225-243
CATGTGAAGATACTTGCTTTTGCCTCATCA225AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
BR018982 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-154F11 5', mRNA sequence.
EX034338.1:96-114
CATGTGAAGATACTTGCTTTTGCCTCATCA96AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
BR121330 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-85D10 5', mRNA sequence.
EX137500.1:42-60
CATGTGAAGATACTTGCTTTTGCCTCATCA42AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
RR2CZ61TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX758366.1:12-30
GGGCCTCATCA12AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCTTTCGTGAGC
RR1G940TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD962943.1:12-30
GGGCCTCATCA12AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCTTTCGTGAGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086B23, complete sequence.
AC232530.1:91401-91419
CATGTGAAGATACTTGCTTTTGCCTCATCA91401AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-13.
CP023125.1:13812489-13812507
TCACTGATATTGTTTTAATGGTTAAGATTG13812489AGGCCATGTTAGCCATTACAATAGAAGAAAAGAATTGTGGAAGAAAATC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:12697124-12697142
CATGTGAAGATACTTGCTTTTGCCTCATCA12697124AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:12603714-12603732
CATGTGAAGATACTTGCTTTTGCCTCATCA12603714AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:18988092-18988110
CATGTGAAGATACTTGCTTTTGCCTCATCA18988092AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica rapa genome, scaffold: A03.
LR031572.1:12475342-12475360
CATGTGAAGATACTTGCTTTTGCCTCATCA12475342AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:18834348-18834366
CATGTGAAGATACTTGCTTTTGCCTCATCA18834348AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:29605799-29605817
CATGTGAAGATACTTGCTTTTGCCTCATCA29605799AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCTTTCGTGAGC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:12600948-12600966
CATGTGAAGATACTTGCTTTTGCCTCATCA12600948AGGCCATGTTAGCCATTACTTATCTCTTCTCTTCTTTGCCTTTGTGAGC
Orthosia incerta genome assembly, chromosome: 28.
OX411769.1:14725341-14725359
AAGCTTCTGTGCTTTTGGACGGAGCTAGGC14725341AGGCCATGTTAGCCATTACCCACACACATAAAAGAACGAATGGGAGTCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3165.
FX659587.1:1341-1359
GCTCACGAAAGCAAAGAAGAGAAGAGATAA1341GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_19161.
FX701253.1:1421-1439
GCTCACAAAGGCAAAGAAGAGAAGAGATAA1421GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_34918.
FX735811.1:1400-1418
GCTCACAAAGGCAAAGAAGAGAAGAGATAA1400GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_19076.
FX737763.1:1296-1314
GCTCACGAAAGCAAAGAAGAGAAGAGATAA1296GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
TSA: Raphanus sativus RS14181 mRNA sequence.
JT798728.1:1347-1365
GCTCACGAAAGCAAAGAAGAGAAGAGATAA1347GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:60254193-60254211
GCTCACAAAGGCAAAGAAGAGAAGAGATAA60254193GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
Linaria vulgaris genome assembly, chromosome: 5.
OX415253.1:11731889-11731907
TTCCATATTAATTTGATCATATTCTTCTCT11731889GTAATGGCTAACATGGCCTCAGCTTCGACCCACTTGGTATAATATTCCA
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:5916484-5916502
GCTCACGAAAGCAAAGAAGAGAAGAGATAA5916484GTAATGGCTAACATGGCCTTGATGAGGCAAAAGCAAGTATCTTCACATG
Mythimna impura genome assembly, chromosome: 15.
LR990354.1:17029538-17029556
TGAGGGAGGCCTTTGCCCAGCAGTGGGACA17029538GTAATGGCTAACATGGCCTACATCTGCGCCCGCGCATCCCATTCGTTTG
Pararge aegeria genome assembly, chromosome: Z.
LR990891.1:19319019-19319037
ACAGACTGTGTTGTCTAGACGTAAGAATAT19319019GTAATGGCTAACATGGCCTTATTAAATGTATTTATCATCACAGATACAA
Callimorpha dominula genome assembly, chromosome: 3.
OX456993.1:6848420-6848438
ACACATACATATGTACCAATTTTTTTAACT6848420GTAATGGCTAACATGGCCTGTTTGATGATAAGACGATACCGGAACCTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGCCATGTTAGCCATTAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGCCATGTTAGCCATTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.028 | 1.020 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCCATGTTAGCCATTAC&k=0&no_gap=0&offset=0&limit=50
1.144 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=GTAATGGCTAACATGGCCT&k=0&no_gap=0&offset=0&limit=24
1.151 | 0.007 | cgi_end;

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