GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 22:27:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Camelina sativa cultivar CO46 chromosome 5.
CP131554.1:10684813-10684832
CAGCAAAACCCTTCCTCCTCGAAACCACCA10684813AGGCCTCCAACATCTTCCTCCGCCGCTGCATCTTCCACCGCCGTGGCTTC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX638814.1:428264899-428264918
TGAATGATGTTGAAGAGGATATTCTTCATG428264899AGGCCTCCAACATCTTCCTCGTCGTCATGGCCTTTGATCGGTGCTAGTAC
Lathyrus aphaca genome assembly, chromosome: 4.
OZ014522.1:409248085-409248104
CCTCGCGCAGCTCGAGATTCTCTTGTTGTA409248085AGGCCTCCAACATCTTCCTCCGATTAGCTCGAGTATCAACCTTGTGAGTC
LUSGC1NG-RP-219_C08_02APR2007_060 LUSGC1NG Linum usitatissimum cDNA, mRNA sequence.
JG099224.1:329-348
GGTGATGATGAAAAATGTGACTAGAAAGAG329GAGGAAGATGTTGGAGGCCTTCATGTGGCTTGAGGGAGAGGAAAATTTTA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:1616726-1616745
ATCGCACACACAACCGTATCCTTGAGAGTT1616726GAGGAAGATGTTGGAGGCCTTTATGTTTCCATGGACAAGTTTCCCACCAT
Nycteola revayana genome assembly, chromosome: 14.
OX344852.2:5890875-5890894
TGGACTAGACATGGACCATAGAACAGAGTG5890875GAGGAAGATGTTGGAGGCCTTTGCCAAGGTTGGAATTTTGTTTTTTAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGCCTCCAACATCTTCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGCCTCCAACATCTTCCTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.330 | 0.322 | search_plus_done; http://172.18.8.135:50400/match?q=AGGCCTCCAACATCTTCCTC&k=0&no_gap=0&offset=0&limit=50
0.553 | 0.223 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAAGATGTTGGAGGCCT&k=0&no_gap=0&offset=0&limit=47
0.555 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).